Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p18f
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0214 - 14938411-14938569,14938626-14938791,14938961-14939019     28   5.0  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   5.0  
11_06_0181 + 20985960-20987825,20987904-20989169                       28   6.7  
10_08_0164 - 15347180-15347446                                         28   6.7  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    27   8.8  

>11_04_0214 - 14938411-14938569,14938626-14938791,14938961-14939019
          Length = 127

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -3

Query: 409 Y*SAIRLVFSFFDSVCRCLNVCEFCVRFAGSSLG*ISCLNRGSFASHNKITHNVKTSWSC 230
           Y SA RL+ + F  VC+  N+ E      G S G I C    SFA  N++  + ++S +C
Sbjct: 67  YGSAPRLIQAEFHQVCQSQNLVE------GLSQGKIWC----SFAMGNQVIFDDRSSKAC 116

Query: 229 ISD 221
           + D
Sbjct: 117 MED 119


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 345 QTLRHRQTESKNEKTSRIADQYRQRH 422
           Q +R  Q E   +KT  +AD+Y +RH
Sbjct: 158 QNIRCSQVEKFQDKTEFVADKYHERH 183


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 525 STPILGQRRHFDLISRSEPISNSIRKKLNRTRPSDASVCTDR 400
           S  ILG+R+  D    +  ++++I +K+    PSDA   T++
Sbjct: 499 SLQILGRRKLCDSSDSNRAMNSNIERKMKYNSPSDADWSTEQ 540


>10_08_0164 - 15347180-15347446
          Length = 88

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 449 LRIEFDMGSLREIRSKWRRCPKMGVLGFEY 538
           LRIE    S   IRS+W++   M  LGF++
Sbjct: 3   LRIEMSSNSCSIIRSRWQQPWHMSPLGFDW 32


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 351 LRHRQTESKNEKTSRIADQYRQRHR 425
           LR RQ +++ E  +R AD+YR+  R
Sbjct: 94  LRQRQVKAETEAWARAADEYRELER 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,009
Number of Sequences: 37544
Number of extensions: 258758
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)