Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p18f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   3.4  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   3.4  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical p...    27   7.9  

>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 312 NELPANLTQNSQTLRHRQTESKNEKTSRIADQYRQRH 422
           NEL A   ++ +T    ++ S+NE T R  D+ R++H
Sbjct: 741 NELHAMKKRHLETQHEAESASQNEYTQRQQDELRKKH 777


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 312 NELPANLTQNSQTLRHRQTESKNEKTSRIADQYRQRH 422
           NEL A   ++ +T    ++ S+NE T R  D+ R++H
Sbjct: 741 NELHAMKKRHLETQHEAESASQNEYTQRQQDELRKKH 777


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 285 PRFRQLIQPNELPANLTQNSQTLRHRQTESKNEKTSRIADQYRQRHRRDVFDSTSYESSL 464
           P  RQ I   ELP     +  T    Q   K ++  +   Q  + HR DV +    ESS+
Sbjct: 299 PEIRQDIYYGELPEGTIVDDLTQDRLQNFRKRQEIWKTMGQMVEEHRTDVHEEIVGESSV 358


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 513 LGQRRHFDLISRSEPISNSIRKKLNRTRPS-DASVCTDRLFD*FSHFSILFVDVL 352
           L   ++FD +++   ++N+I+KKL   RP  + +   D +   FSH  I F+  L
Sbjct: 333 LRMEKYFDRLAKLMKVNNAIQKKLWEQRPRIELAKVFDLIKLEFSHPEISFIQKL 387


>Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/59 (20%), Positives = 33/59 (55%)
 Frame = +3

Query: 357 HRQTESKNEKTSRIADQYRQRHRRDVFDSTSYESSLIWAHSERLDQNGDVVLRWVYSDS 533
           H  T++  +   ++AD  + + +  +  + + ++  I++H+E++D  G+  L W+ + S
Sbjct: 168 HMNTKNDTDVDLKLADVKKNQAKIILLYANAAQAGTIFSHAEKMDMIGEKYL-WIGTQS 225


>Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/59 (20%), Positives = 33/59 (55%)
 Frame = +3

Query: 357 HRQTESKNEKTSRIADQYRQRHRRDVFDSTSYESSLIWAHSERLDQNGDVVLRWVYSDS 533
           H  T++  +   ++AD  + + +  +  + + ++  I++H+E++D  G+  L W+ + S
Sbjct: 168 HMNTKNDTDVDLKLADVKKNQAKIILLYANAAQAGTIFSHAEKMDMIGEKYL-WIGTQS 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,058,923
Number of Sequences: 27780
Number of extensions: 253513
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)