Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p18f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.11 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 327 NLTQNSQTLRHRQTESKNEKTSRIADQYRQRHR 425
           N  +N +++ HRQ  SKNE+  +  +Q R+R R
Sbjct: 46  NSLRNHKSIYHRQ-HSKNEQQRKEMEQMRERER 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 262 FYYATQSCRGSDS*FNPTSYQRISRR 339
           F+Y   SC G    F  +  Q+I  R
Sbjct: 77  FHYGVHSCEGCKGFFRRSIQQKIQYR 102


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 441 NRTRPSDASVCTDRLFD*FSHFSILFVDVLTF 346
           +R R  +  + T  +FD     SILF DV+TF
Sbjct: 405 DRLRNGENPIDTCEMFD---SVSILFSDVVTF 433


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 293  QTADSTQRATSESHAELANVKTST 364
            +T D ++    E H ++ N+KT T
Sbjct: 1028 ETVDFSKEDGKEHHLQIMNLKTYT 1051


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 212 TISIRNAAPTSFNIVCN 262
           TI   N  P+S N+V N
Sbjct: 85  TIERNNGVPSSLNVVTN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,302
Number of Sequences: 438
Number of extensions: 2813
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)