Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p17f
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   236   8e-63
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   4.8  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.3  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  236 bits (578), Expect = 8e-63
 Identities = 108/186 (58%), Positives = 146/186 (78%), Gaps = 1/186 (0%)
 Frame = +1

Query: 46  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 225
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 226 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVY 402
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 403 NAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 582
           +A L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VT
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186

Query: 583 FEFPEP 600
           FEFP+P
Sbjct: 187 FEFPDP 192


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +1

Query: 301 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILE---DLVFPAEIVGKRIRVKLD 471
           + V   ++LPK   +  +A KQ+       T+ YN IL+   + V   E     +  ++ 
Sbjct: 253 IHVRGEQVLPKRISENWIAKKQQLISGDQFTAAYNKILDEKNETVKKCEEEKALVMSEIG 312

Query: 472 GSQLIKVHL-DKNQQTTIEHKVDTFQ 546
           G+    V   D+  Q ++  +VDT Q
Sbjct: 313 GTNYTSVRREDRANQKSLRLRVDTSQ 338


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 110 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 220
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 31  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 201
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 202 I 204
           +
Sbjct: 302 V 302


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 527 CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALYTEV 390
           C   +C F+  C ++SC      ++R      GKT+ +R  L+T+V
Sbjct: 334 CQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNREYLHTKV 374


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 460 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 591
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 460 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 591
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 132 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 46
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,870
Number of Sequences: 27780
Number of extensions: 278877
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)