Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p15r
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   6.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   6.8  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 361 FMNCRKNPDVTFYIVHVIISF 299
           F NC+   D +FY+  +I SF
Sbjct: 24  FQNCKLGIDASFYLTQIIHSF 44


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 619 LNNYFNINGMTNITEILL*TRCYIHGKNKKDSSFIFQMS 735
           L N   +N  T++ E L     Y+HG    DSSF  Q S
Sbjct: 63  LGNLSELNVATDLLESLDLRSMYMHGYGHLDSSFSSQHS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,518
Number of Sequences: 5004
Number of extensions: 53775
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)