Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p15r
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 32 0.52
U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical pr... 28 6.4
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 8.4
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 8.4
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 8.4
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 8.4
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 8.4
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 8.4
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 8.4
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 8.4
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 8.4
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 8.4
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 535 CLYFNIPQINFIAMKFIISFISLYNYKKFSKLKN*YLTITKMI-YIFCFIFNLCQ*IIKF 359
C+ I N + + I+F+ L K + K+ Y+ + +IFC +F L ++ F
Sbjct: 12 CISTEIVVFNVLGLFGNINFLCLTYIKPALRSKSYYIQCALSVSHIFCLLFELPNAVLLF 71
Query: 358 MNCRKNPDVTFYIVHVIISFYC 293
+ ++ F + + I F C
Sbjct: 72 TGIQLRRNICFPAISLYIFFIC 93
>U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical
protein T22E5.3 protein.
Length = 547
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 400 FCFIFNLCQ*IIKFMNCRKNPDVTFYIVHVIISFYCN*TIVPSSPLRAK 254
F + F LC + F RK ++ +++HV+ F C + SSP A+
Sbjct: 91 FDYCFGLCNGTMHFDYSRKKDFLSCFVLHVVSIFPCLTSSYESSPSEAR 139
>Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical
protein F40D4.5 protein.
Length = 310
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -3
Query: 535 CLYFNIPQINFIAMKFIISFISLYNYKKFSKLKN*YLT-ITKMIYIFCFIFNLCQ*IIKF 359
C+ I N + + +F+ L K + K+ YL + + +I C +F + + F
Sbjct: 11 CIASEIVVFNILGLFGHFNFLCLTYKKPALRSKSSYLQCVLSVSHIICLLFEIPNAALLF 70
Query: 358 MNCRKNPDVTFYIVHVIISFYC 293
R +V F + + + F C
Sbjct: 71 TGIRLKRNVCFPAISIYVFFIC 92
>Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical
protein F20E11.2 protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 535 CLYFNIPQINFIAMKFIISFISLYNYKKFS-KLKN*YLTITKMI-YIFCFIFNLCQ*IIK 362
C+ I + + + I+F+ L YKK S + K+ YL + +I C +F + +
Sbjct: 11 CIASEIVVFDVLGLFGHINFLCL-TYKKPSLRSKSSYLQCALSVSHIICLLFEIPNAALL 69
Query: 361 FMNCRKNPDVTFYIVHVIISFYC 293
F R +V F + + + F C
Sbjct: 70 FTGIRLKRNVCFPAISIYVFFIC 92
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1342 DYRNKWVNHRYNFDNLGQALMSL 1364
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1301 DYRNKWVNHRYNFDNLGQALMSL 1323
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1301 DYRNKWVNHRYNFDNLGQALMSL 1323
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1342 DYRNKWVNHRYNFDNLGQALMSL 1364
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DYQSKNVRHHFNFDKLSSPLKGL 273
DY++K V H +NFD L L L
Sbjct: 1294 DYRNKWVNHRYNFDNLGQALMSL 1316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,898
Number of Sequences: 27780
Number of extensions: 283162
Number of successful extensions: 449
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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