Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p15f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    75   1e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      54   2e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    46   3e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    38   0.001
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    30   0.23 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.2  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   5.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.0  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   6.6  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   6.6  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   8.8  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   8.8  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
 Frame = +2

Query: 182 SEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 361
           + +L  E+ EWI        N   D+    + L+ G +LC++        I+    S+M 
Sbjct: 2   TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57

Query: 362 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY--GK-P 529
           F  MENI+AF+  A+Q+  VP+Q+ FQT DL+ER+N   V+  + S  R A     GK  
Sbjct: 58  FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117

Query: 530 SIGPKEAEKNVRNFSEEQLRA-GQGVISLQ 616
            +GPK AEK  R FS +Q R   +GV SLQ
Sbjct: 118 GLGPKLAEKKPRVFSAQQQREFREGVNSLQ 147


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +2

Query: 200 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 376
           E+ +WI    G      G    F + L++G +L  L     P+ +IK   ++ + F+  +
Sbjct: 46  EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102

Query: 377 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 499
           NIN FL+    +G+P    F+  D++E +NL  V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = +2

Query: 197 HESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 373
           HE+ +W+     E  N   ++D+F + L +G +LC+LA   +P +         ++ +  
Sbjct: 68  HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124

Query: 374 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 499
             +NAF      +G+     F+T DL  R N+  V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
 Frame = +2

Query: 110 EMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIR-MITGEPENTSGDMDN-----FY 271
           E+   R T  G ++     IN    EE   E ++ I  ++ G+P+  S    N     F+
Sbjct: 91  EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146

Query: 272 EVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 415
           +  KDG +L KL N+  P+ I      K+ N   +  FKC+EN N  + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +2

Query: 263 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 415
           +F+  L+DG +L +  + I PN +  KK+N +       M FK +EN N  ++  +  G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/89 (21%), Positives = 35/89 (39%)
 Frame = +2

Query: 335 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 514
           ++  +S  A    E + AF+E A+Q G+P  E       W+   +      + +L +   
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177

Query: 515 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 601
            Y    +      +NVR    +    G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 391 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 522
           P+ +  V CTG G+      V   +S    D L +TG+ G  L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +2

Query: 278 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 454
           LK+ T +  L+++IHPN    +++ S      +N+ N   E  + L +      + VD +
Sbjct: 6   LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57

Query: 455 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 568
           E+  L +  I  +++     TY K S+G     +N  N
Sbjct: 58  EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   GTCPVDPPACLHSVHSDFTFYRVCDLFK*FIKL 99
           G+  V  P CLHSV   FT   V  L++ F++L
Sbjct: 236 GSATVQTP-CLHSVPDAFTNPDVATLYQKFLRL 267


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +1

Query: 10  PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 186
           P  PP  L S H +FT          F+  L  R+ +   S   RI   +P  D  QI  
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225

Query: 187 GAG 195
             G
Sbjct: 226 RTG 228


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -3

Query: 445 DSLKSFLCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDVVG*LAQKSAVFKHFVE 266
           D L+ FLC+    SC F  +    H +         +D   + V G   Q S  + H+  
Sbjct: 118 DELRYFLCKKESDSCYFGNASSSFHFVTSPSTFFIRYDD-NITVAGINVQDSLSYSHYQA 176

Query: 265 VVHIP*GVLW--FAGDHPNPFQGLVG 194
           +     G+    +      P++G++G
Sbjct: 177 LPDFQFGITLKEYVPSSMLPYKGVLG 202


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 427 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 314
           L R+  LS      +D++  L+G + C     HV  D+
Sbjct: 67  LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 140 LIWSLGCLPFRTNNNLINYLNK 75
           LIW+  CL   T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 231 PVIIRIHSKDSWASSSLYLL 172
           P IIR H +D W S  + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,971
Number of Sequences: 5004
Number of extensions: 60031
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)