Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p14r
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    31   0.17 
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    28   1.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.6  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   3.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.2  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   8.2  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 688  TWSGSASRRSSTAPGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 527
            T +GS    ++ A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1140 TTTGSEVLPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQATT 1194



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 700  TTADTWSGSASRRSST--APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMA 530
            T  +T + +A+   +T  A G +GT T AT A    PT+G  GTA  + + T  T  +  
Sbjct: 1194 TATETQATTATEVQTTTGATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPT 1253

Query: 529  T 527
            T
Sbjct: 1254 T 1254



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 700  TTADTWSGSASRRSST--APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMA 530
            T  +T + +A+   +T  A G +GT T AT A    PT+G  GTA  + + T  T  +  
Sbjct: 1276 TATETQATTATEVQTTTGATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPT 1335

Query: 529  T 527
            T
Sbjct: 1336 T 1336



 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 652  APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 527
            A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1234 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1276



 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 652  APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 527
            A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1316 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1358



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = -2

Query: 700  TTADTWSGSASRRSSTAPGVSGTTA----ATEARTSGPTSGLRGTASPQRKTTEDTSDRM 533
            TT  T +     + +T      TTA    AT A     T+G  GTA  + + T  T  + 
Sbjct: 1335 TTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGTAGTETQVTTATEVQP 1394

Query: 532  ATVMSIT 512
             T ++ T
Sbjct: 1395 TTAVTET 1401


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 171 YVCGCTFDSAVVLLRGHEDVAVVPPHVRPGVLDEPVLLAVED 296
           Y C     + +V+  G E+  ++   VRPGV+D P+ +++ +
Sbjct: 150 YCCSKAAINMLVMNLGSEEPDIMSVAVRPGVVDTPMQVSIRN 191


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 706  SCTTADTWSGSASRRSSTAPGVSG--TTAATEARTSGPTSGLRGTASPQRKTTEDTSDRM 533
            S ++A +WS S+    STA   +G  T++   A  SG ++    TAS    +T   +   
Sbjct: 949  SSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAAS 1008

Query: 532  AT 527
             T
Sbjct: 1009 VT 1010


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 145  SSDYEPYIST--YVGALSTPQLFSFEDMR 225
            S+   P+IST  Y+GA+ TPQL     +R
Sbjct: 1220 SNCLNPFISTRSYMGAIPTPQLLDLRALR 1248


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 582 PLNPLVGPEVLASVAAVVPETPGAVDERLLAEP 680
           PLNP +    L S +   P TP A   +L A+P
Sbjct: 410 PLNPTLLQNALTSASLPSPPTPHASASKLAAKP 442


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 470 TNDEKALKLAIFKHGPISVAIDASHKSFSFYANGVYFEPNCKNKVEELDHAVL 312
           ++ + ++ L    H P+SV    SH + S  AN  +  P  K ++E +D   L
Sbjct: 611 SDSQSSIDLDSSFHYPVSVDSQLSHSTGSLMAN--FSSPTKKRRLESVDFIFL 661


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 692 GHLVRLSQQALIDCSWGFGNNGCDGG 615
           G+LVR    A  D  W +  N CD G
Sbjct: 349 GNLVRPGYLATSDGVWPYSYNSCDAG 374


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 476 VTTNDEKALKLAIFKHGPISVAID 405
           ++ ND K  K A FKH P+   I+
Sbjct: 327 ISVNDPKVKKYASFKHCPVEKLIE 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,069
Number of Sequences: 5004
Number of extensions: 47081
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)