Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p14r
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.31 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -2

Query: 682 SGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTTED-TSDRMATVMSIT 512
           S SA   SS  PG +   A    R S     L GTAS    T     SDR A   S++
Sbjct: 147 SSSAPTGSSCGPGAAAAAALLSKRRSVSECSL-GTASSTSSTASSRNSDRSAGSPSVS 203


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 700 TTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRK 560
           TT  T +  A+  + T P       AT   T+  T+G   T  P R+
Sbjct: 221 TTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGT--TTIPTRR 265


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 270 EPVLLAVEDAVADRQHRVVQLLNFVLAIR 356
           +P+L      V D + +++++L F+L +R
Sbjct: 34  KPLLKKEYPLVMDTKLKIIEILQFILDVR 62


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 270 EPVLLAVEDAVADRQHRVVQLLNFVLAIR 356
           +P+L      V D + +++++L F+L +R
Sbjct: 2   KPLLKKEYPLVMDTKLKIIEILQFILDVR 30


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 682 SGSASRRSSTAPGVSGTTAATEARTSGPTS 593
           S +A+  +ST+P  + +TAAT   +  P++
Sbjct: 831 SAAATSSTSTSPRPASSTAATLVLSGCPSN 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,876
Number of Sequences: 438
Number of extensions: 3125
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)