Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p14f
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    31   0.12 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   2.7  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   4.7  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   4.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   8.1  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   8.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   8.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   8.1  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 387  TWSGSASRRSSTAPGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
            T +GS    ++ A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1140 TTTGSEVLPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQATT 1194



 Score = 30.7 bits (66), Expect = 0.16
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 375  TTADTWSGSASRRSST--APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMA 545
            T  +T + +A+   +T  A G +GT T AT A    PT+G  GTA  + + T  T  +  
Sbjct: 1194 TATETQATTATEVQTTTGATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPT 1253

Query: 546  T 548
            T
Sbjct: 1254 T 1254



 Score = 30.7 bits (66), Expect = 0.16
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 375  TTADTWSGSASRRSST--APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMA 545
            T  +T + +A+   +T  A G +GT T AT A    PT+G  GTA  + + T  T  +  
Sbjct: 1276 TATETQATTATEVQTTTGATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPT 1335

Query: 546  T 548
            T
Sbjct: 1336 T 1336



 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 423  APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
            A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1234 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1276



 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 423  APGVSGT-TAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
            A G +GT T  T A    PT+G  GTA  + + T  T  +  T
Sbjct: 1316 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1358



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +3

Query: 375  TTADTWSGSASRRSSTAPGVSGTTA----ATEARTSGPTSGLRGTASPQRKTTEDTSDRM 542
            TT  T +     + +T      TTA    AT A     T+G  GTA  + + T  T  + 
Sbjct: 1335 TTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGTAGTETQVTTATEVQP 1394

Query: 543  ATVMSIT 563
             T ++ T
Sbjct: 1395 TTAVTET 1401


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 468 KSSPPSQPLFPKPQEQS---MSACWLSRTRCPPLCRNSAPSTAPTVPNDQHEPH 316
           K S PS+ ++P P+  +   + + +  R    P  + S P TA T+P  + +PH
Sbjct: 185 KYSAPSK-IYPSPRRSTAATLESAYEERPPSLPRRKPSRPGTAITLPPYESDPH 237


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 375  TTADTWSGSASRRSSTAPGVSG--TTAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
            ++A +WS S+    STA   +G  T++   A  SG ++    TAS    +T   +    T
Sbjct: 951  SSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVT 1010


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 493 PLNPLVGPEVLASVAAVVPETPGAVDERLLAEP 395
           PLNP +    L S +   P TP A   +L A+P
Sbjct: 410 PLNPTLLQNALTSASLPSPPTPHASASKLAAKP 442


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = -3

Query: 459 PPSQPLFP--KPQEQSMSACWLSRTRCPPLCRNSAPSTAPTVPNDQHEPH 316
           PP+Q   P  +P        + +    PP C  S  S   TVP   H P+
Sbjct: 164 PPTQHHHPHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPY 213


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 132 ILPIALTTSS-PPSEGGGTRGPALTVSRSRTANL 230
           I P+  +TSS P S+GGG   PA+  S S   NL
Sbjct: 118 IPPVLHSTSSLPASQGGGMPSPAI-YSSSMATNL 150


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 383 GHLVRLSQQALIDCSWGFGNNGCDGG 460
           G+LVR    A  D  W +  N CD G
Sbjct: 349 GNLVRPGYLATSDGVWPYSYNSCDAG 374


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = -3

Query: 465 SSPPSQPLFPKPQ-EQSMSACWLSRTRCPPLCRNSA---PSTAPTVPNDQHEP 319
           ++PPS P  P PQ E         R   PP    SA   PS AP +P+    P
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 502 EAVPLNPLVGPEVLASVAAVVPETPGAV 419
           ++ P+  L+ P+VLAS+ A V   P  V
Sbjct: 190 QSQPIQQLLPPDVLASIRADVTREPAKV 217


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 384 PPLCRNSAPSTAPTVPNDQHEPHTD*SLTGVTA-PNNLQSCSGGSFTLNSST 232
           PP  R SAPS  P       +P    ++  V+A P++++S S  S    S +
Sbjct: 583 PPYVRPSAPSKLPDTRQSIGDPLPPGAMANVSAGPSSVRSSSYNSTASESKS 634


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 157 LVVSAIGKMVHGHGETAVRSIIGMYVSERLPEDVQPLLVL 38
           + +  +G+ + G+G      I+ MY++E  P  ++  LV+
Sbjct: 173 VAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVI 212


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 449 CDGGEDFRAYEWIKRHGLPTEE 514
           C GGE FRA   + +H LP ++
Sbjct: 235 CAGGEFFRALHSLPKHILPEKD 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,326
Number of Sequences: 5004
Number of extensions: 43533
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)