Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p14f
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 218 2e-57
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 7e-40
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 4e-32
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 2e-30
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 6e-27
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 113 8e-26
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 86 2e-17
SB_28131| Best HMM Match : Peptidase_C1 (HMM E-Value=1.2e-40) 79 3e-15
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 8e-14
SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07) 74 8e-14
SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07) 73 1e-13
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40) 71 7e-13
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 60 2e-09
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_1137| Best HMM Match : CC (HMM E-Value=2) 56 3e-08
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 55 4e-08
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 54 1e-07
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14) 46 2e-05
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39) 32 0.30
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 31 0.52
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027) 31 0.91
SB_39997| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.7
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 28 4.9
SB_31013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_44729| Best HMM Match : SET (HMM E-Value=0) 28 6.4
SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4) 28 6.4
SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) 28 6.4
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_15979| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.4
SB_14739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.4
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_3395| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 28 6.4
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 218 bits (533), Expect = 2e-57
Identities = 100/183 (54%), Positives = 128/183 (69%), Gaps = 1/183 (0%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRGRRYS 187
KH++ Y + EH R F+ +LR+IHS NR + G+ +++NHL DR+D EL LRGRRY+
Sbjct: 562 KHKKNYKDNKEHHTRREHFKHNLRFIHSKNRRHAGYYLAMNHLGDRSDKELRVLRGRRYT 621
Query: 188 GPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQSVCGSCWSFGTVGAVEGAL 367
GLP+ + + + +P E +W + GAVTPVKDQ+VCGSCWSFGT G +EG L
Sbjct: 622 KGYNGGLPYKPDMASIND----VPDEMNWVIRGAVTPVKDQAVCGSCWSFGTTGTIEGTL 677
Query: 368 FLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWI-KRHGLPTEEDYGGYLGQDG 544
FL +L RLSQQ L+DCSWG GNN CDGGEDFR+Y++I K G+ TEE YG YLG DG
Sbjct: 678 FLKT-KYLTRLSQQNLMDCSWGEGNNACDGGEDFRSYQYIMKSGGIATEESYGPYLGADG 736
Query: 545 YCH 553
YCH
Sbjct: 737 YCH 739
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 160 bits (389), Expect = 7e-40
Identities = 82/190 (43%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 2 KVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRGRR 181
K ++++Y S EHEKR +I+R ++ ++ NH+AD TD E+ ++G
Sbjct: 430 KASYRKRYPSAHEHEKRKDIYRHNM-------------SLKPNHMADMTDAEVNRMKGLL 476
Query: 182 YSGPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQSVCGSCWSFGTVGAVEG 361
+ P G P+S ++ V LPP DWR GAV VK Q +CGSC++F GA+EG
Sbjct: 477 HEEPPLIG-DSPFSIPD-KDRGVPLPPHVDWRKAGAVNSVKSQGICGSCYAFAVAGALEG 534
Query: 362 ALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWIKRH-GLPTEEDYGGYLGQ 538
A F+ G L LS+Q ++DC+WGFGN GC GG +RA +WI +H GL TEE YG YL Q
Sbjct: 535 AHFIQTGLKL-DLSEQQIVDCTWGFGNRGCKGGYPYRAMQWILKHGGLATEESYGRYLAQ 593
Query: 539 DGYCHVDNVT 568
+GYCH N +
Sbjct: 594 EGYCHFKNTS 603
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALR 172
+H + Y D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +
Sbjct: 1200 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSYK 1254
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 80 YIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
YI S NR + + + NH AD TDDE + +G
Sbjct: 1289 YIRSMNRRSLPYKLEPNHFADLTDDEFKSYKG 1320
>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 134 bits (325), Expect = 4e-32
Identities = 73/186 (39%), Positives = 109/186 (58%), Gaps = 5/186 (2%)
Frame = +2
Query: 11 HQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELA----ALRGR 178
H ++Y + E R I++ +L+ I ++N F +++NHL D T E++ L+ +
Sbjct: 36 HGKEYPNKNEETMRNFIWQNNLKKIVTHNEGKHSFKLAMNHLGDMTSLEISQTLLGLKLK 95
Query: 179 RYSGPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQSVCGSCWSFGTVGAVE 358
+++ P G F + +VK+ DWR G VTPVK+Q CGSCW+F T GA+E
Sbjct: 96 KHAESQPKGATF------LPPANVKVVDSIDWRSKGYVTPVKNQGQCGSCWAFSTTGALE 149
Query: 359 GALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWIKRH-GLPTEEDYGGYLG 535
G F G LV LS+Q L+DCS +GNNGC+GG A+++IK + G+ TE+ Y YL
Sbjct: 150 GQHF-RKTGKLVSLSEQNLVDCSGKYGNNGCEGGLMDNAFQYIKENGGIDTEKSY-PYLA 207
Query: 536 QDGYCH 553
+DG CH
Sbjct: 208 KDGVCH 213
>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 129 bits (311), Expect = 2e-30
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Frame = +2
Query: 2 KVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRGRR 181
K+ H ++Y + E R I+R +L+ I +N FT+++NHL D T DE
Sbjct: 251 KLFHTKKYTTVTEEGARKAIWRDNLKKIQKHNAEGHSFTLAMNHLGDLTQDEFRYF---- 306
Query: 182 YSGPSPHGLPFPYSKSR--VEELSVKLPPEHDWRLFGAVTPVKDQSVCGSCWSFGTVGAV 355
Y+G H + + + V++P DWR G VTPVK+Q CGSCW+F T G++
Sbjct: 307 YTGMRSHYSNYTKKQGSAFLAPSHVQVPDTVDWRKEGYVTPVKNQGQCGSCWAFSTTGSL 366
Query: 356 EGALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWIKRH-GLPTEEDY 520
EG F G LV LS+Q L+DCS +GNNGC GG A+++IK + G+ TEE Y
Sbjct: 367 EGQNF-KKTGKLVSLSEQNLVDCSTAYGNNGCQGGLMDYAFKYIKENGGIDTEESY 421
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 86.6 bits (205), Expect(2) = 6e-27
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = +2
Query: 284 GAVTPVKDQSVCGSCWSFGTVGAVEGALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGE 463
GAV+PV+ Q +CGSC++ VGAVEGA F+ G L LS Q +IDCSWG GN GC GG
Sbjct: 322 GAVSPVRGQGICGSCYALAAVGAVEGAYFMKT-GKLKELSAQQVIDCSWGSGNRGCKGGY 380
Query: 464 DFRAYEWIKRH 496
+A WI H
Sbjct: 381 YNKAMSWIYLH 391
Score = 52.0 bits (119), Expect(2) = 6e-27
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H +QY S+ E KR +IFR ++RYI S NR N + ++ NH D TD E +G
Sbjct: 267 QHNKQYDSEHEVSKRKHIFRHNMRYIRSINRKNLKYKLAPNHFVDLTDGEYDQHKG 322
>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 1220
Score = 113 bits (273), Expect = 8e-26
Identities = 65/147 (44%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Frame = +2
Query: 119 MSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYS-KSRVEELSVKLPPEHDWRLFGAVT 295
M++NHL D T+DE Y G H + + +VK+P DW G VT
Sbjct: 1 MAMNHLGDLTEDEFRYF----YLGVRAHHNSTKRGWATYMPPSNVKIPSSVDWSQKGYVT 56
Query: 296 PVKDQSVCGSCWSFGTVGAVEGALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRA 475
VK+Q CGSCW+F T G+VEG F G LV LS+Q LIDCS +GNNGC GG A
Sbjct: 57 GVKNQGQCGSCWAFSTTGSVEGQHFRKTGS-LVSLSEQNLIDCSGSYGNNGCQGGLMDNA 115
Query: 476 YEWIKRH-GLPTEEDYGGYLGQDGYCH 553
+ +I+ + G+ TE Y YLGQ G CH
Sbjct: 116 FRYIESNGGIDTESSY-PYLGQQGSCH 141
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 86.2 bits (204), Expect = 2e-17
Identities = 46/125 (36%), Positives = 62/125 (49%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRGRRYS 187
+H + Y D EH +R +IFR ++RYI S NR + + + +NH D TDDE + +G
Sbjct: 50 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLELNHFPDLTDDEFKSYKG-ALD 108
Query: 188 GPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQSVCGSCWSFGTVGAVEGAL 367
S + + E D GAV P K Q CGSCW+F T GAVE A
Sbjct: 109 DESKDVMNDHDDVIDDDVNDETQEDEEDEPSDGAVNPAKGQGTCGSCWAFATAGAVEAAH 168
Query: 368 FLHNG 382
F+ G
Sbjct: 169 FIQEG 173
>SB_28131| Best HMM Match : Peptidase_C1 (HMM E-Value=1.2e-40)
Length = 295
Score = 78.6 bits (185), Expect = 3e-15
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +2
Query: 368 FLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGY 547
F G L S+Q L+DCSWGFGNNGC GG +R W ++ G+ + YG YL Q+GY
Sbjct: 48 FSSTTGKLKDFSEQQLLDCSWGFGNNGCRGGFSWRGLVWARKFGVTSSRTYGRYLAQEGY 107
Query: 548 CH 553
CH
Sbjct: 108 CH 109
>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 74.1 bits (174), Expect = 8e-14
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Frame = +2
Query: 383 GHLVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGY 547
G L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ GL T + YG Y GQ+G+
Sbjct: 37 GELLNLAEQQLLDCTWSTPEVYHGNNGCLGGWTWKAFSWVKKFGLATTKSYGHYRGQEGF 96
Query: 548 CHVDNVT 568
C N+T
Sbjct: 97 CKTSNLT 103
>SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07)
Length = 122
Score = 74.1 bits (174), Expect = 8e-14
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Frame = +2
Query: 383 GHLVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGY 547
G L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ GL T + YG Y GQ+G+
Sbjct: 2 GELLNLAEQQLLDCTWSTPGVYHGNNGCLGGWTWKAFSWVKKFGLATTKSYGHYRGQEGF 61
Query: 548 CHVDNVT 568
C N+T
Sbjct: 62 CKTSNLT 68
>SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07)
Length = 122
Score = 73.3 bits (172), Expect = 1e-13
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Frame = +2
Query: 383 GHLVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGY 547
G L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ G+ T + YG Y GQ+G+
Sbjct: 2 GELLNLAEQQLLDCTWSTPGVYHGNNGCLGGWTWKAFSWVKKFGIATTKSYGHYRGQEGF 61
Query: 548 CHVDNVT 568
C N+T
Sbjct: 62 CKTSNLT 68
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 73.3 bits (172), Expect = 1e-13
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Frame = +2
Query: 383 GHLVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGY 547
G L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ G+ T + YG Y GQ+G+
Sbjct: 186 GELLNLAEQQLLDCTWSTPGVYHGNNGCLGGWTWKAFSWVKKFGIATTKSYGHYRGQEGF 245
Query: 548 CHVDNVT 568
C N+T
Sbjct: 246 CKTSNLT 252
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 80 YIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
YI S NR + + NH AD TDDE + +G
Sbjct: 2 YIRSMNRRSLPHKLEPNHFADLTDDEFKSYKG 33
>SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40)
Length = 251
Score = 70.9 bits (166), Expect = 7e-13
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Frame = +2
Query: 389 LVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGYCH 553
L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ G+ T + YG Y GQ+G+C
Sbjct: 45 LLNLAEQQLLDCTWSTPGVYHGNNGCLGGWTWKAFSWVKKFGIATTKSYGHYRGQEGFCK 104
Query: 554 VDNVT 568
N+T
Sbjct: 105 TSNLT 109
>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = +2
Query: 308 QSVCGSCWSFGTVGAVEGALFLHNGGHLVRLSQQALIDCSWGFGNNGCDGGEDFRAYEWI 487
Q CGSCW+F + G++EG F G LV LS+Q L+DCS +GNNGC+GG A+++I
Sbjct: 342 QCQCGSCWAFSSTGSLEGQHF-RKTGKLVSLSEQNLVDCSKKYGNNGCEGGLMDYAFKYI 400
Query: 488 K 490
K
Sbjct: 401 K 401
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +2
Query: 11 HQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAA-LRGRRYS 187
H + Y + E + R I+ +L + +N N + + +NH AD T E G R +
Sbjct: 188 HGKTYTGE-EEDLRRAIWNDNLEIVKKHNAENHSYKLDMNHFADLTVTEFKQRFMGYRAA 246
Query: 188 GPSPHGLPF-PYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQ 310
S G F P S +V+LP E DWR G VT VK+Q
Sbjct: 247 SNSTGGSTFLPLS-------NVQLPAEVDWRDKGFVTAVKNQ 281
>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Frame = +2
Query: 383 GHLVRLSQQALIDCSWG-----FGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQ 538
G L+ L++Q L+DC+W GNNGC GG ++A+ W+K+ G+ T + YG Y GQ
Sbjct: 62 GELLNLAEQQLLDCTWSTPGVYHGNNGCLGGWTWKAFSWVKKFGIATTKSYGHYRGQ 118
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Frame = +2
Query: 203 GLPFPYSKSRVEELSVKLPPEH-----DWRLFGAVTPVKDQSVCGSCWSFGTVGAVEGAL 367
G P P K + +S+ P+H W + V+DQ CGSCW+FG V A+
Sbjct: 69 GPPLPLRKKLL--ISMDDVPDHFDSREQWPHCPTIKEVRDQGACGSCWAFGAVEAMSDRY 126
Query: 368 FLHNGGHLV-RLSQQALIDCSWGFGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDG 544
+H+ G ++ +S + L+ C G GC+GG A++ K GL T Y + G
Sbjct: 127 CIHSEGKVMPHISAEDLLSCCETCG-MGCNGGYPESAWDHWKSKGLVTGGQYDSHKGCQP 185
Query: 545 Y 547
Y
Sbjct: 186 Y 186
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +G
Sbjct: 221 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRCSLPYKLEPNHFADLTDDEFKSYKG 276
Score = 52.8 bits (121), Expect = 2e-07
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +2
Query: 431 GFGNNGCDGGEDFRAYEWIKRHGLPTEEDYGGYLGQDGYCHVDNVT 568
G+ +G GG ++A+ W+K+ G+ T + YG Y GQ+G+C N+T
Sbjct: 329 GYRRSGISGGWTWKAFSWVKKFGIATTKSYGHYRGQEGFCKTSNLT 374
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +G
Sbjct: 492 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSYKG 547
>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +G
Sbjct: 50 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSYKG 105
>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +G
Sbjct: 149 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSYKG 204
>SB_1137| Best HMM Match : CC (HMM E-Value=2)
Length = 410
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +2
Query: 2 KVKHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRGRR 181
K KH + Y + EH++R +I++ + R+I S NR N + + NHLAD T+ E+ G
Sbjct: 318 KAKHGKHYRTHAEHDQRKHIYKHNFRFISSKNRQNLSYKLKTNHLADLTEKEVQRTNGLL 377
Query: 182 YSGPS-PHGLPFPYSKSRVEELSVKLPPEHDWR 277
H + ++ K+P + DWR
Sbjct: 378 DDATKCTHAQSLHFDLAKALH---KIPVKLDWR 407
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S NR + + NH AD TDDE + +G
Sbjct: 1292 QHDKMYEDDSEHCRRKHIFRHNVRYIRSMNRRSLPHKLEPNHFADLTDDEFKSYKG 1347
>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + D EH +R +IFR ++RYI S NR + + + NH AD TDDE + +G
Sbjct: 70 QHDKVCEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSYKG 125
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALRG 175
+H + Y D EH +R +IFR ++RYI S R + + + NH D TDDE + +G
Sbjct: 50 QHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRRSLPYKLEPNHFGDLTDDEFKSYKG 105
>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLRYIHSNNRANRGFTMSVNHLADRTDDELAALR 172
+H + Y D +H + +IFR ++RYI S NR + + + NH D TDDE + +
Sbjct: 47 QHDKVYEDDSKHHRLKHIFRHNVRYIRSMNRRSLPYKLEPNHFGDLTDDEFKSYK 101
>SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14)
Length = 183
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 458 GEDFRAYEWIKRHGLPTEEDYGGYLGQDGYCHVDNVT 568
G ++A+ W+K+ GL T + YG Y GQ+G+C N+T
Sbjct: 2 GWTWKAFSWVKKFGLATTKSYGHYRGQEGFCKTSNLT 38
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -3
Query: 468 KSSPPSQPLFPKPQEQSMSACWLSRTRCPPLC---RNSAPSTAPTVPNDQHEPHTD*SLT 298
++S P+ P P S +A + + PL R + PS+ PT P +H T ++T
Sbjct: 95 ETSQPATTTVPAPPPSSTTAPVNAPAQQQPLLQPQRPTPPSSYPTQPPSRHPTQTQSAIT 154
Query: 297 GVTAP--NNLQSCSGGSFTLNSS 235
G + P N Q + GS + N +
Sbjct: 155 GPSHPDKNESQGKTWGSVSSNEA 177
>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
Length = 504
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 413 LIDCSWGFGNNGCDGGEDFRAYEWI-KRHGLPTEEDYGGYLGQDGYCHVDNVTAVTSI 583
L+DC + GC+GG AY+ I K GL +E DY Y G D C + +I
Sbjct: 272 LVDCDTI--DKGCEGGLPSNAYKQIEKLGGLESESDY-PYKGADSKCKFNKAEVKVTI 326
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 502 EAVPLNPLVGPEVLASVAAVVPETP---GAVDERLLAEPDQVSAV 377
E VP +GPE+L +V +VP P AV E + A P+ V AV
Sbjct: 25 EVVPPPVAIGPEILPAVPEIVPAVPEVVPAVPEIVPAVPEVVPAV 69
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 547 VAILSEVSSVVFLCGEAVP-LNPLVGPEVLASVAAVVPETP---GAVDERLLAEPDQVSA 380
V ++ EV V AVP + P V PEV+ +V VVP P AV E + A P+ V A
Sbjct: 73 VPVVPEVEPAVPEVVPAVPEIVPAV-PEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPA 131
Query: 379 V 377
V
Sbjct: 132 V 132
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = -2
Query: 562 VIDMTVAILSEVSSVVFLCGEAVPLNPLVGP---EVLASVAAVVPETP---GAVDERLLA 401
V+ I+ V VV E VP P V P E++ +V VVP P AV E + A
Sbjct: 86 VVPAVPEIVPAVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPA 145
Query: 400 EPDQVSAV 377
P+ V AV
Sbjct: 146 VPEIVPAV 153
>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
Length = 295
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = +2
Query: 251 KLPPEHDWRLFGAV---TPVKDQSV---CGSCWSFGTVGAV 355
KLP DWR + ++Q + CGSCW+ GT A+
Sbjct: 50 KLPTSFDWRDVNGTNYASTTRNQHIPQYCGSCWAHGTTSAM 90
>SB_39997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 30.7 bits (66), Expect = 0.91
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 125 VNHLADRTDDELAALRGR-RYSGPSPH-GLPFPYSKSRVEELSVKLPPEHDWRLFGAVTP 298
+N AD ++E + R R++ SP G F + +++LP + DWR G VTP
Sbjct: 1 MNEFADMCEEEFRNVYLRYRFNASSPQRGATF------MAPNNLELPTKVDWRQQGYVTP 54
Query: 299 VKDQ 310
VK+Q
Sbjct: 55 VKNQ 58
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 507 VGRPCLLIHS*ALKSSPPSQPLFPKPQEQSMSACWLSRTRCPPLCRNSAPSTAPTVPNDQ 328
+G P LI +K SP + P+ P P S + S + P S ST P P+
Sbjct: 1243 IGSPSSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTPIKPSPS 1302
Query: 327 HEP 319
P
Sbjct: 1303 TTP 1305
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 2 KVKHQRQYASDLEHEKRLNIFRQSLR 79
K ++++Y S EHEKR +I+R ++R
Sbjct: 302 KASYRKRYPSAHEHEKRKDIYRHNMR 327
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 375 TTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTTEDTSDRMATVM 554
TTA T +A+ ++T + TTAA + TS TA T T+ AT
Sbjct: 323 TTATTTEAAATAEATTTATATTTTAAITTTAATTTSEAAATAEATTTATATTTVTAATST 382
Query: 555 SIT 563
T
Sbjct: 383 KTT 385
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 255 CLRNTTGDCSERSLPL 302
CL NTTGD ER LPL
Sbjct: 285 CLHNTTGDDCERCLPL 300
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 393 SGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTT 521
+G++ + + G +GT+ T + G T RGT R TT
Sbjct: 192 TGTSRGITEASRGTTGTSRGTTGASRGTTGASRGTTGASRGTT 234
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 TTADTWSGSASRRSSTAP-GVSGTTAATEARTSGPTSGLRGTASPQRKTT 521
T A + ASR ++ A G +GT+ T + G T RGT R T
Sbjct: 283 TGASRGTTGASRGTTGASRGTTGTSRGTTGASRGTTGASRGTTGASRGNT 332
>SB_31013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 95 NRANRGFTMSVNHLADRTDDELAALRG 175
NR + + + NH AD TDDE + +G
Sbjct: 2 NRRSLPYKLEPNHFADLTDDEFKSYKG 28
>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 8 KHQRQYASDLEHEKRLNIFRQSLR 79
+H + Y D EH +R +IFR ++R
Sbjct: 50 QHDKVYEDDSEHRRRKHIFRHNVR 73
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 426 PGVSGTTAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
P ++G + +TE R T+ L+G ++K+ EDT+D + T
Sbjct: 78 PNLNGHSESTE-REGDKTTKLKGQKKRKQKSIEDTNDVVKT 117
>SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4)
Length = 810
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -2
Query: 562 VIDMTVAILSEVSSVVFLCGEAVPLNPLVGPEVLASVAAVVPETPGAV 419
++D+ + ++ +V+ VV + VP +P + PE S++ +P A+
Sbjct: 148 IVDVAIVVIVDVAVVVMVWLTLVPSSPHMYPETHISISRSMPINTQAI 195
>SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 390 RCPPLCRNSAPSTAPTVPNDQHEPH---TD*SLTGVTAPNNLQSCSG 259
R P NS P+T+ P PH D S +P +L SCSG
Sbjct: 113 RKPSTSTNSTPTTSAATPPTPLPPHPVAKDTSSKSSPSPYDLPSCSG 159
>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
Length = 1105
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 375 TTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTTEDTSD 536
TT+ T + S+ + T P ++ TA T+GPT+ T S + TT T++
Sbjct: 426 TTSTTGHSTRSKPTPTTPTIADNTAYL---TTGPTTSGDKTTSAIKPTTPTTTE 476
>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 129 FTDMVKPRFARLLECMYLS 73
FT ++KP ++++L+C YLS
Sbjct: 3 FTKLLKPVYSKILQCRYLS 21
>SB_15979| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 367
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = +2
Query: 32 DLEHEKRLNIFRQ---SLRYIHSNNRANR 109
D+E + LN+F+Q +L+YIH+NN +R
Sbjct: 123 DMEEKDILNMFQQMLSALKYIHNNNILHR 151
>SB_14739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 140 DRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQSV 316
D+TDD L Y+G SP L +++ V + PE D +L + DQ+V
Sbjct: 4 DQTDDHLKYTFHEVYNGNSPRCLLAKVESLTIDDQIVTITPEEDIKL-SRIANGDDQTV 61
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 6.4
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 2/138 (1%)
Frame = +3
Query: 150 TTSSPPSE--GGGTRGPALTVSRSRTANLEWRS*A*SCLRNTTGDCSERSLPLKIXXXXX 323
TT++P + G T PA T++ TA E + T E ++ +
Sbjct: 800 TTAAPETTVAPGTTDEPATTMAAETTAAPETSVAPETTAAPETSGAPETTMLPETTSAPA 859
Query: 324 XXXXXXXXXXXXXXXXXTTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTAS 503
T D + +A+R ++ AP T A+ S T TA+
Sbjct: 860 TTMAPEPTAAPETTVAPETTDAPATTAARETTAAPET--TMASETTMASETTMAPEPTAA 917
Query: 504 PQRKTTEDTSDRMATVMS 557
P+ +T+D A M+
Sbjct: 918 PETTVAPETTDAPAITMA 935
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 375 TTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTTEDTSDRMAT 548
TT + +A+ +T VS TTA T+ S T+ + + ++E+TS + T
Sbjct: 243 TTTSASTTTATTTKATTTSVSTTTATTKEEESTTTAETTTVTATKPLSSEETSTMLPT 300
>SB_3395| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 782
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 129 FTDMVKPRFARLLECMYLS 73
FT ++KP ++++L+C YLS
Sbjct: 538 FTKLLKPVYSKILQCRYLS 556
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Frame = +3
Query: 252 SCLRNTTGDCSER--SLPLKIXXXXXXXXXXXXXXXXXXXXXXTTADTWSGSASRRSSTA 425
SC++ T SE S I T+ + + SR+ STA
Sbjct: 89 SCVKKTVQPTSEETTSTASTIAQTSTAAPRGSSTEGRTSTRETATSSINTEATSRQPSTA 148
Query: 426 PGVSGTTAATEARTS-GPTSGLRGTASPQRKTTEDTSDRMATVMSIT 563
VSG + + T TSG+ ++ Q T T+ + T + T
Sbjct: 149 TQVSGPSLPMQHSTEHHSTSGVASPSTKQPSTALTTTKQPTTQQTTT 195
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 387 TWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQ-RKTTEDTSDRMATVM 554
T + ++ S+ VS T+A T TS PT+ + TAS +TT TS TV+
Sbjct: 413 TCPDATTKDVSSTETVSVTSAPTATLTSAPTATVTPTASNAFTETTTVTSTTTITVL 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,255
Number of Sequences: 59808
Number of extensions: 379240
Number of successful extensions: 1683
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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