Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p14f
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.24 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 393 SGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRKTTED-TSDRMATVMSIT 563
           S SA   SS  PG +   A    R S     L GTAS    T     SDR A   S++
Sbjct: 147 SSSAPTGSSCGPGAAAAAALLSKRRSVSECSL-GTASSTSSTASSRNSDRSAGSPSVS 203


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 144 ALTTSSPPSEGGGTRGPA 197
           A+T++SP   GGG+  P+
Sbjct: 75  AITSTSPSYPGGGSSSPS 92


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 375 TTADTWSGSASRRSSTAPGVSGTTAATEARTSGPTSGLRGTASPQRK 515
           TT  T +  A+  + T P       AT   T+  T+G   T  P R+
Sbjct: 221 TTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGT--TTIPTRR 265



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 426  EQSMSACWLSRTRCPPLCRNSAPSTAPTVPNDQHE 322
            +Q +     S+     LCRNS  +  P +  D  E
Sbjct: 1316 QQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSSE 1350


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 393 SGSASRRSSTAPGVSGTTAATEARTSGPTS 482
           S +A+  +ST+P  + +TAAT   +  P++
Sbjct: 831 SAAATSSTSTSPRPASSTAATLVLSGCPSN 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,288
Number of Sequences: 438
Number of extensions: 3265
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)