Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p11r
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 210 4e-55
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 210 4e-55
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 121 2e-28
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 3e-07
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 0.62
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 1.9
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 2.5
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 4.3
01_01_0357 - 2816650-2817897 27 4.3
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 7.6
06_03_1146 - 28004896-28005554,28005664-28005844 27 7.6
03_01_0298 + 2318836-2319051,2321238-2323106 27 7.6
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 27 7.6
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 210 bits (512), Expect = 4e-55
Identities = 95/116 (81%), Positives = 107/116 (92%)
Frame = -2
Query: 407 KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 228
KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP
Sbjct: 28 KKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPN 86
Query: 227 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 60
DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 87 DGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 210 bits (512), Expect = 4e-55
Identities = 95/116 (81%), Positives = 107/116 (92%)
Frame = -2
Query: 407 KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 228
KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP
Sbjct: 198 KKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPN 256
Query: 227 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 60
DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 257 DGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 206 bits (503), Expect = 5e-54
Identities = 93/114 (81%), Positives = 105/114 (92%)
Frame = -2
Query: 407 KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 228
KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP
Sbjct: 28 KKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPN 86
Query: 227 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 66
DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 87 DGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 121 bits (292), Expect = 2e-28
Identities = 54/77 (70%), Positives = 63/77 (81%)
Frame = -2
Query: 407 KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 228
KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP
Sbjct: 99 KKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPN 157
Query: 227 DGCLNHIEENDEVLVAG 177
DGCLN I+EN+ V G
Sbjct: 158 DGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2
Query: 197 DEVLVAGFGRKGHAVGDIPGVRFKVVK 117
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 0.62
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 163 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 339
P P+T S S+ F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 340 MPF 348
PF
Sbjct: 337 SPF 339
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 148 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 258
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 166 LRPNPATSTSSFSSMWFRQPSRGT 237
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 29 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 178
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 149 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 235
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 386 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 282
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 136 TPGMSPTA*PLRPNPATSTSSFSS 207
TP SP+ P+ P PA +TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 279 DAFADGRVGLLSFYTNFLEDDALCVRCTTERVSL 380
DAFA GLLS ++D LC+ C E VSL
Sbjct: 422 DAFAQCMGGLLSVV---VKDMRLCIECIDEGVSL 452
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 161 DLYDRIPPLVLRRFLRCGLGNRHGGR 238
++Y + P LRR L GLG GG+
Sbjct: 57 EVYRAVGPRFLRRLLNTGLGKVEGGK 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,417
Number of Sequences: 37544
Number of extensions: 244492
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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