Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p11f
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   197   6e-52
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   197   6e-52
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   4e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   2.3  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   3.0  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.0  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   4.0  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   7.0  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    24   9.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.3  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  197 bits (481), Expect = 6e-52
 Identities = 91/116 (78%), Positives = 105/116 (90%)
 Frame = +2

Query: 2   KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 181
           KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 
Sbjct: 28  KKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPH 87

Query: 182 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 349
           DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 88  DGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  197 bits (481), Expect = 6e-52
 Identities = 91/116 (78%), Positives = 105/116 (90%)
 Frame = +2

Query: 2   KKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 181
           KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 
Sbjct: 28  KKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPH 87

Query: 182 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 349
           DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 88  DGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +2

Query: 47  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 226
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 227 AGFGRKGHAVGDIPGVRFKVVK 292
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 228 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 112
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 288 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 178
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 442 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 269
           HN  Y++  Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 268 GNVTDGV 248
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 346 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 224
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 176 PRDGCLNHIEENDEVLVAGFGRKGHAVG 259
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 380 TAGHLSQCTPMILVAPFSLCRERGETRWLL 291
           TA  L+QC  +I +  F++ RE     WLL
Sbjct: 212 TAVFLAQCVKVISIGLFNIRREMMIIIWLL 241


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 436 IYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTNSGN 263
           + YV G     TY     + ++ Y   +  ++  LFL +      VGY++HL  N  N
Sbjct: 234 VSYVSGIVFYTTYADFPKKIRLLYSGNYQGNFFPLFLSILC----VGYYHHLLNNPSN 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,986
Number of Sequences: 5004
Number of extensions: 36880
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)