Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p10f
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.48 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 368 NGVHYHFTNLNDMSTAIEKGEFIE 439
           N + Y+F N N  +T I  G++IE
Sbjct: 25  NVIEYNFPNDNIRNTLISNGDYIE 48


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 204 SFKNVVRVVIQFSVSDKITRSGSGY*YLKFTL 109
           SF  +   +IQF+V    T+ GSG  Y    L
Sbjct: 283 SFAFIFATIIQFAVVHYFTKYGSGECYFSSDL 314


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 1   EFIDYTYTY*ICECS 45
           E+ID T  Y  C+CS
Sbjct: 348 EYIDETRNYQECKCS 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,951
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)