Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p09r
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    48   2e-06
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    38   0.001
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.8  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   8.3  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 31/126 (24%), Positives = 58/126 (46%)
 Frame = -2

Query: 704 EEIKENKERXNGKFDYNSIQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGKPNDKAK 525
           E+++  K   +     + ++ M Y   VV E LRL PP      + +  Y + K      
Sbjct: 348 EQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPP------VLMVPYRVKKAFPITP 401

Query: 524 RDFILRKGTGVAIPVWAFHRNPEFFPDPLKFDPERFSEENKHNIKPFAYLPFGVGPRNCI 345
            D+ + K   V   ++    + + +P+P  F+P+R++        P  ++ FG GP  C+
Sbjct: 402 -DYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCL 460

Query: 344 GSRFAL 327
           G R+A+
Sbjct: 461 GQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
 Frame = -2

Query: 713 KLVEEIKENKERXNGK---FDYNSIQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGK 543
           +++E + E ++R  G+     ++  ++M  L+ V+ E LRL PP  S  R   +D  L  
Sbjct: 309 EIIEMLWEEQKRVVGENLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRD--LPV 366

Query: 542 PNDKAKRDFILRKGTGVAIPVWAFHRNPEFFPDPLKFDPERFSE-----ENKHNI----- 393
           P  K     ++     +           E+F     FDP+R+++     EN   I     
Sbjct: 367 PGSK----IVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYG 422

Query: 392 ---KPFA--YLPFGVGPRNCIGSRFA 330
              K  A  YLPFG G   CIG +FA
Sbjct: 423 LVTKGAASPYLPFGAGRHRCIGEQFA 448


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 580 WIESAFKTTTWGNQMTRPKETSYFAK 503
           WI++ F++T  GN      +T +F+K
Sbjct: 480 WIQNRFQSTVLGNMEDIQSQTEFFSK 505


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   KQYNSNVSHKTFYSFKIIND 62
           KQ+ + V H  FY   IIND
Sbjct: 210 KQWETGVGHMCFYPLSIIND 229


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 374 VDTRKA*CCVCSPLRTF 424
           V+T +A CC+CS L  F
Sbjct: 595 VETGRAICCICSSLHKF 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,365
Number of Sequences: 5004
Number of extensions: 60664
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)