Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p09f
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1279 + 35427916-35429511 40 0.002
03_03_0097 + 14386262-14386532,14387696-14387919,14388057-143883... 36 0.019
03_01_0282 + 2181598-2183124 33 0.18
10_08_0688 - 19907799-19907978,19908077-19908280,19908387-199087... 32 0.31
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 32 0.42
09_02_0585 - 10939328-10939724,10940242-10940431,10940722-109407... 31 0.55
01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379... 31 0.55
01_01_0779 - 6030245-6031780 31 0.73
11_05_0093 + 18992027-18993514 31 0.96
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094... 31 0.96
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 30 1.3
03_03_0099 + 14400651-14400936,14403705-14403731,14403956-144042... 30 1.3
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 30 1.3
10_08_0687 - 19893148-19893327,19893442-19893645,19893761-198940... 30 1.7
02_01_0545 + 3996568-3996645,3998061-3998168,3998409-3998493,399... 30 1.7
01_01_0780 - 6036454-6037992 29 2.2
07_03_1404 + 26329179-26329455,26329602-26330878 29 2.9
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 29 3.9
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 29 3.9
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 28 6.8
05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994... 28 6.8
02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640 27 8.9
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 27 8.9
>02_05_1279 + 35427916-35429511
Length = 531
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P +Y+ D E +K T + + P+FGR L +G EW R ++PAF
Sbjct: 101 PFLYVADPEFLKAATAGALGKLWGKPDVFRRDRMPMFGRGLVMAEGDEWARHRHIIAPAF 160
Query: 607 TSS 615
+++
Sbjct: 161 SAT 163
>03_03_0097 +
14386262-14386532,14387696-14387919,14388057-14388307,
14388393-14388771,14388958-14389389
Length = 518
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P I + D +VK+I K + HF+ + + + G+ L ++G +W R L+PAF
Sbjct: 102 PRICVSDYNLVKQILSKKYGHFV--KNDAHPAILSMIGKGLVLVEGADWVRHRRVLTPAF 159
Query: 607 T 609
T
Sbjct: 160 T 160
>03_01_0282 + 2181598-2183124
Length = 508
Score = 33.1 bits (72), Expect = 0.18
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Frame = +1
Query: 220 LAIGLAFLLYLKQIYCYFSKHEIKSITPL--PILGNMGKIVFKINHFVDDISQLYNKFPE 393
L + L+FL + Y + + + PL P++G + ++ NH + I+ + P
Sbjct: 9 LELLLSFLCFGFFYYYHVKSKQKNPVIPLQWPLVGMLPALLANCNHLHEWITSVLTVTPL 68
Query: 394 E-RFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQE 570
RF+G + D ++ + +F ++ R +E I G +FS G+
Sbjct: 69 NFRFIGPPSSDMRLFITSDPANIRHVFNTNFSNYPKGREF--QEIFDILGDGIFSADGES 126
Query: 571 WKDMRS 588
W+ R+
Sbjct: 127 WRRQRT 132
>10_08_0688 -
19907799-19907978,19908077-19908280,19908387-19908722,
19908815-19909102,19909196-19909411,19910985-19911311
Length = 516
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 433 IYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAFTS 612
IY D +V+ I +F + + +E + +FG +F++ G++WK R S FT+
Sbjct: 88 IYTCDPAVVEHILRTNFPSY-GKGPLNSEILNDLFGEGIFAVDGEKWKTQRKIASYDFTT 146
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P + + +E VK++ ++ F + +N + + G+ L G++W+ R + PAF
Sbjct: 105 PAVSLGRVEQVKQVLLERTGSFT--KNYMNANLEALLGKGLILANGEDWERHRKVVHPAF 162
>09_02_0585 -
10939328-10939724,10940242-10940431,10940722-10940790,
10941080-10941206,10941401-10941696,10941791-10941954,
10942453-10942601
Length = 463
Score = 31.5 bits (68), Expect = 0.55
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 361 DISQLYNKFPEERFVGRYEFVNPVIY--IRD-IEIVKRITIKDFEHFLDHRTIVNEETDP 531
++ + N F ERF+G+ F PV Y + D IE+ +I + H LD +
Sbjct: 153 ELEKFTNNF--ERFIGQGGF-GPVFYGCLEDGIEVAVKIRSESSSHGLDQFFAEVQSLTK 209
Query: 532 IFGRNLFSLKGQEWK 576
+ RNL SL G W+
Sbjct: 210 VHHRNLVSLVGYCWE 224
>01_05_0768 +
25036945-25037296,25037499-25037722,25037902-25037955,
25038006-25038253,25038909-25039296,25039392-25039802,
25039919-25040077,25040632-25040979
Length = 727
Score = 31.5 bits (68), Expect = 0.55
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 352 FVDDISQLYNKFPEERFVGRYEFV----NPVIYIRDIEIVKRITIKDFEHFLDHRTIVNE 519
F+ ++ L ++ EE GR F P + I D ++V+ + F HF +T +
Sbjct: 102 FIPRVAPLLHRALEEH--GRVSFTWFGPMPRVTITDPDLVREVLSNKFGHF--EKTKLAT 157
Query: 520 ETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
+ L L G++W R ++PAF
Sbjct: 158 RLSKLLVGGLVILHGEKWVKHRRIMNPAF 186
>01_01_0779 - 6030245-6031780
Length = 511
Score = 31.1 bits (67), Expect = 0.73
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Frame = +1
Query: 220 LAIGLAFLLYLKQIYCYFSKHEIKSITPL--PILGNMGKIVFKINHFVDDISQLYNKFPE 393
LA +A + ++Q+ + K + PL P LG+ ++ F D + L K
Sbjct: 27 LAAAVALYMLIEQLSYHRKKGSMPG-APLVVPFLGSAAHLIRDPVGFWDVQAALARK-SG 84
Query: 394 ERFVGRYEFVNPVIYIRDIEIVKRITIK---DFEHFLDHRTIVNEETDPIFGR-NLFSLK 561
+ F ++IRD E+ R+ D H + H +FG NL L
Sbjct: 85 AGLAADFLFGRFTVFIRDSELSHRVFANVRADAFHVVSHPF-----GKKLFGEHNLVYLV 139
Query: 562 GQEWKDMRSTLSPAFT 609
G+E KD+R ++P FT
Sbjct: 140 GEEHKDLRRRIAPNFT 155
>11_05_0093 + 18992027-18993514
Length = 495
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 432 HRIYKLISTNESFFWKFVVQLRNIINKMVNLEDNLAHVA 316
H +Y ST+ FW+FV R I + + + D L HVA
Sbjct: 236 HDMYASASTSRDLFWRFVRSFRGIRSLKLKVSD-LKHVA 273
>01_04_0121 -
16307839-16308315,16308394-16308793,16308978-16309452,
16309936-16310353
Length = 589
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P + I D E+++ + + + F + + + + G L SL+G +W R L+PAF
Sbjct: 151 PRLAIADPELIREVLLARADRFDRYES--HPMVRQLEGEGLVSLRGDKWAHHRRVLTPAF 208
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P + + D+E+ K++ + D L + + +FGR L G EW+ + + PAF
Sbjct: 104 PDMCVADVEVAKQV-LSD-RTGLFPKNVTTPMLLKLFGRGLVLANGDEWQRHKKVVHPAF 161
Query: 607 TS 612
+
Sbjct: 162 NT 163
>03_03_0099 +
14400651-14400936,14403705-14403731,14403956-14404236,
14404423-14404512,14405660-14406100
Length = 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P I I D E+ ++I HFL + + G+ L L+G +W R ++PAF
Sbjct: 116 PRICIFDYELARQILSSKSGHFL--KNDAPPTLVALMGKGLVLLEGTDWVRHRRVINPAF 173
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P + I + E+VK I F HF + + L S +G++W R L+PAF
Sbjct: 152 PRVVIAEPELVKDILSNKFGHF---EKFTLKSLGKLIALGLASYEGEKWARHRRILNPAF 208
>10_08_0687 -
19893148-19893327,19893442-19893645,19893761-19894096,
19894185-19894472,19894561-19894776,19896414-19896737
Length = 515
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 433 IYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAFTS 612
IY D +V+ I +F ++ + + +FG +F++ G +WK R S FT+
Sbjct: 87 IYTCDPAVVEHILRTNFANY-GKGSFNHGNMSDLFGDGIFAVDGDKWKQQRKIASYDFTT 145
>02_01_0545 +
3996568-3996645,3998061-3998168,3998409-3998493,
3998789-3999024,3999250-3999423,3999510-3999557,
3999659-3999718,3999815-3999901,4000007-4000095,
4000209-4000300,4001110-4001171,4001271-4001420,
4001507-4001722
Length = 494
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 373 LYNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLF 552
LY+ F E V + F + IV R +++ F + ++ E PI G+ L
Sbjct: 20 LYDWFLEHGSVYKLAFGPKAFVVVSDPIVARHILRE-NAFCYDKGVLAEILKPIMGKGLI 78
Query: 553 SLKGQEWKDMRSTLSPAF 606
WK R ++P F
Sbjct: 79 PADLDTWKQRRKVITPGF 96
>01_01_0780 - 6036454-6037992
Length = 512
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 430 VIYIRDIEIVKRITIK---DFEHFLDHRTIVNEETDPIFG-RNLFSLKGQEWKDMRSTLS 597
+++IRD E+ +R+ D H + H +FG NL + G+E KD+R ++
Sbjct: 91 MVFIRDSELSRRVFANVRADAFHLVGHPF-----GKKLFGDHNLIYMVGKEHKDLRRRIA 145
Query: 598 PAFT 609
P FT
Sbjct: 146 PNFT 149
>07_03_1404 + 26329179-26329455,26329602-26330878
Length = 517
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P I + D+ +V+++ + D + + N + G+ L G EWK R + PAF
Sbjct: 104 PTICLADVSMVRQV-LSDRTGMYP-KNVSNPYFARLLGKGLVLTDGDEWKRHRKVVHPAF 161
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 433 IYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAFTS 612
IY D +V+ I +F ++ + +FG +F++ G++WK R S F++
Sbjct: 70 IYTCDPAVVEHILKTNFANY-GKGPFNHGNAKDLFGDGIFAIDGEKWKQQRKIASYDFST 128
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P +++ D E+ + + F HF + E + + L + +G++W R L+P F
Sbjct: 112 PEVHVADPELARVVLSNKFGHF---EKVSFPELSKLIPQGLSAHEGEKWAKHRRILNPVF 168
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 414 ISTNESFFWKFVVQLRNIINKMVNLEDNLAHVA 316
+ T ESF+ FVV L+N++ V++ NL+ ++
Sbjct: 599 VPTTESFWNPFVVSLQNLLKCNVDIRINLSPIS 631
>05_04_0270 -
19598062-19598694,19598797-19599154,19599247-19599491,
19599869-19599877,19599909-19599977,19600043-19600552
Length = 607
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 532 IFGRNLFSLKGQEWKDMRSTLSPAF 606
+FG L L G++W R ++PAF
Sbjct: 140 LFGEGLVGLTGEKWARHRRVIAPAF 164
>02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640
Length = 537
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 301 PLPILGNMGKIVFKINHFVDDISQLYNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKD 480
P P++GN+ I + D+S+ Y RF G + PV+ +++ + +
Sbjct: 50 PWPVIGNLNLIGALPYRSIRDLSRRYGPLMSLRF-GSF----PVVVGSSVDMARYFLRAN 104
Query: 481 FEHFLDH-RTIVNEETDPIFGRNLFSLKGQEWKDMR 585
FLD RT T + L+S G+ W+ R
Sbjct: 105 DLAFLDRPRTAAGRYTVYNYAGVLWSHYGEYWRQAR 140
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 427 PVIYIRDIEIVKRITIKDFEHFLDHRTIVNEETDPIFGRNLFSLKGQEWKDMRSTLSPAF 606
P + I D ++ K + F HF + +F +L + +G++W R L+PAF
Sbjct: 115 PKVTITDPDLAKGVLSNKFGHFEKPKF---PTLTKLFSDSLANHEGEKWVKHRRILNPAF 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,733
Number of Sequences: 37544
Number of extensions: 290070
Number of successful extensions: 698
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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