Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p07f
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   2e-14
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   7e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   4e-05
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   6.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   6.0  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +2

Query: 182 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 331
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +2

Query: 188 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 331
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +2

Query: 188 KSKNHTNHNQNRKAHRNGIKKPR 256
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 221 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 322
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 242  YHFCELCGFGYDLYDSL 192
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 242  YHFCELCGFGYDLYDSL 192
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +3

Query: 51  VKNSLNINKII*QN--KYFKIE*AIRCVGIYSNDF---IFLYRIENSSKWQSQRIIQIIT 215
           +K S N+NKI   +   Y KI   + C     N F      Y  ++S KW+  ++   +T
Sbjct: 178 IKKSPNVNKIQKDDTSNYQKI---LVCSNALYNGFDKTTKKYNSDSSEKWKFIKVNYFVT 234

Query: 216 KTAKLTEMVSKSQG 257
           KT       + +QG
Sbjct: 235 KTTTTNNATNTTQG 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,425,540
Number of Sequences: 27780
Number of extensions: 151910
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)