Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p06r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   4.9  

>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 518 SPRRTLKHRLSSRYQWFISKK*FIFNVGSRQN 423
           S ++T KHRL S    + S     FN+G+R N
Sbjct: 63  SEKKTRKHRLMSELSMYESVHDSSFNLGTRPN 94


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 113 YYLHDLHTNILNVIFFKYVFDTTQSNSFQKV 205
           YY   +H  +L++  F+YV + T  + +QK+
Sbjct: 335 YYAKIIHGLLLDLTVFEYVLEHTLPHLYQKI 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,231
Number of Sequences: 5004
Number of extensions: 63237
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)