Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p06r
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0567 - 4178440-4178530,4179248-4180311                           29   3.9  
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    28   6.7  
03_06_0013 - 31007580-31007657,31007795-31007876,31007963-310080...    28   6.7  

>01_01_0567 - 4178440-4178530,4179248-4180311
          Length = 384

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 645 YRSRYICLPHR*RKTSYLHSITITILIDLKGGVGGLWG 532
           Y  R  CLP+R  + +  H  T+ + + LK G+G  WG
Sbjct: 337 YGDRRNCLPNRPAQRTLRHIETVCVAVVLK-GIGKWWG 373


>11_01_0595 +
           4732330-4732723,4732839-4732903,4733023-4733143,
           4733596-4733687,4733850-4733915,4734106-4734125,
           4734147-4734239,4734358-4734445,4734570-4734635,
           4734728-4734843,4735410-4735500,4736133-4736234,
           4736342-4736425,4736551-4736643,4736728-4736823,
           4736914-4736999,4737528-4737606,4737675-4737788,
           4737890-4737985,4738060-4738123,4738221-4738510,
           4738901-4738956,4739060-4739177,4739287-4739367,
           4739683-4739762,4740001-4740055,4740142-4740211,
           4740279-4740468,4740567-4740690,4741055-4741129,
           4741217-4741390
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = +2

Query: 14  HRFINISLKLVQIVHDVQELSGY*TYIIKRTNKYYLHDLH-----TNILNVIFFKYVFDT 178
           HRF+ +S+ L+Q      E        I  TN  Y + +      T+ L  + F Y+ D 
Sbjct: 213 HRFLGLSVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQELGFDYLRDN 272

Query: 179 TQSNSFQKVRRYP 217
              N  Q V R+P
Sbjct: 273 LSRNKEQLVMRWP 285


>03_06_0013 -
           31007580-31007657,31007795-31007876,31007963-31008065,
           31008156-31008315,31009016-31009207,31009880-31010194
          Length = 309

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 606 KTSYLHSITITILIDLKGGVGGLWG 532
           KT Y+    +++ ID+  G GG WG
Sbjct: 169 KTIYVFGFGVSLFIDVDQGTGGKWG 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,052
Number of Sequences: 37544
Number of extensions: 384954
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)