Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p06r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.32 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.32 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 321 DRDYM*RSSTVFDHGWHVPHGTDYH 395
           D+ Y+ R   +++  WHV   T YH
Sbjct: 28  DKTYVTRQKNIYELFWHVDQPTVYH 52



 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 119 LHDLHTNILNVIFFKYVFDT 178
           +HDLHT I   I   YV D+
Sbjct: 326 IHDLHTRISTAIDLGYVVDS 345


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 321 DRDYM*RSSTVFDHGWHVPHGTDYH 395
           D+ Y+ R   +++  WHV   T YH
Sbjct: 28  DKTYVTRQKNIYELFWHVDQPTVYH 52



 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 119 LHDLHTNILNVIFFKYVFDT 178
           +HDLHT I   I   YV D+
Sbjct: 326 IHDLHTRISTAIDLGYVVDS 345


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 557 FKSIKIVIVILCR*DVFLYLCG-----RHMYRLRYYYFLD*KKDV 676
           F  + ++I +L    V  ++C        +YRL+ Y F D  +D+
Sbjct: 8   FPVLFVIINVLLHGQVICFVCKDITSTSALYRLKLYLFCDYDRDI 52


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 396 SGSLYHAVRATHDRTQWRNVTCSRDPQQ*GNDIEEERKRLGPKPY 262
           SG L+  +R        +   CS+   Q G  +   R   G KPY
Sbjct: 160 SGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPY 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,304
Number of Sequences: 438
Number of extensions: 4658
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)