Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p06f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    31   0.13 
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   2.2  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   2.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   3.8  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   6.7  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.8  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 230  YNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQVADIHNHESIKYLR 373
            +  LP +VY++ V +L +F+EI E      +  Q+ D + H     LR
Sbjct: 2694 WQQLPKRVYQSHVSLLHHFQEIVELQEAFGIYSQLNDTNIHNIDNKLR 2741


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 179 DVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEE 292
           ++S +RR+ L + FIN YNDL + VY  +   +   EE
Sbjct: 70  NMSKDRREALTY-FINSYNDLFHDVYYGDGRSMSKTEE 106


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/81 (18%), Positives = 37/81 (45%)
 Frame = +2

Query: 143 IFQIIVIYNCSCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVV 322
           I ++ + Y  S ++     +  LH  IN+ +D    +Y+    V    E++ + +  +V 
Sbjct: 299 IMELALDYVSSDNIGDIFSKNFLHCLINHLSDEDRYLYRAAKRVTSKLEKVSKQNPTLVY 358

Query: 323 NLQVADIHNHESIKYLRCSST 385
            + +  +    S+ + R ++T
Sbjct: 359 PIAIHLLGERGSLNFDRVTNT 379


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 230 YNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQVADIHNHESIKYLRCSSTV 388
           Y++   Q  KT+  V    +  +E  +KI   +Q  DIH  +S+   R  +T+
Sbjct: 71  YDNFGEQGLKTDWNVGFPGKSAEELKNKIREQIQERDIHEIDSLVQSRSETTI 123


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 437 QELPDQQGVS--VQQETTEITEQNPI-HFDNENEFNTVSPTEQLIAAPRKDG 583
           ++L + Q  S    ++ T + E N +  F +EN  N   P ++     RKDG
Sbjct: 439 EDLEEDQNKSKIASKDGTNLKEINSVPEFSDENVINQTGPAKKTPVQRRKDG 490


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/91 (21%), Positives = 39/91 (42%)
 Frame = +2

Query: 119 SIKSAYLLIFQIIVIYNCSCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEID 298
           SIK++  ++  I    +     S E R ++L         + N++YK E  + Q   ++ 
Sbjct: 698 SIKASVSVLPDIYEDSDAMSKASKETRSEVLECSKVRVYIVQNRIYKLEEALRQGESKMT 757

Query: 299 ETSSKIVVNLQVADIHNHESIKYLRCSSTVQ 391
                    L +  I +   I+  RCS+T++
Sbjct: 758 VQRRNAANILHLEPIQSRTRIRLARCSNTLK 788


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 341 YQQLAS*LLFY*RSHRFLQNSAERLLRFYKPD*VNH 234
           Y  ++S L    +SH F +  A  +++ Y PD + H
Sbjct: 49  YSSMSSMLFGSDQSHIFCEKEAANVIKSYSPDLIVH 84


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 582 PSFLGAAINCSVGETVLNSFSLSKCMGFCSVISV 481
           PSF+GA +   V + + N+ S+   +   + IS+
Sbjct: 457 PSFIGATVFAHVSQIMFNNMSVKWAVATMAFISI 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,517
Number of Sequences: 5004
Number of extensions: 51176
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)