Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p06f
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 30 1.3
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199... 30 1.7
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 29 3.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 5.2
03_05_0555 + 25555081-25555432,25555488-25555699 28 6.9
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116... 27 9.1
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 27 9.1
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 27 9.1
>06_01_0668 - 4882174-4884204
Length = 676
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = +2
Query: 173 SCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQVADI--- 343
SC S+ ++ L H + + + P + + LQ E + E K+V+ ++ +
Sbjct: 260 SCGYSIAQQAALFHSIKSLFMNKPLVIVCNKTD-LQPLENLSEEDMKLVMEMKAEAMKTL 318
Query: 344 -HNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITE 496
H E+ + T+ E+GV+ + C+ L DQ+ V ++ ++ +I +
Sbjct: 319 GHGGEANEE-GVLLTMSTLTEEGVMAVKNAACERLLDQR-VEIKMKSKKIND 368
>08_01_0239 -
1993833-1994114,1994266-1994436,1994541-1994686,
1995127-1995182,1995314-1995437,1995527-1995712,
1995787-1995845,1996413-1996630,1996853-1996966,
1997339-1997466,1997591-1997650,1998225-1998386,
1998796-1998883
Length = 597
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 365 YLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQE----TTEITEQNPIH 511
YL+ S D EQ +V I CQ D GV + E + ++T P+H
Sbjct: 512 YLKIDSAKDDHGEQKSLVKRIIQCQRREDHAGVELLMESCKDSRDLTIMKPVH 564
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 NCSCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQV-ADI 343
+CSC E K LH + Y D+ + + G QN E+D S V D+
Sbjct: 677 SCSCSAPEELTPKELHIVLQQYEDMRRR--RNSFGFKQNIPEMDAVSLDAFATAAVYGDV 734
Query: 344 HNHES 358
N S
Sbjct: 735 GNQGS 739
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +2
Query: 416 VLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQL-----IAAPRKD 580
+LN + E+P QGVSV + + I N F+ +PT L I +P +
Sbjct: 150 LLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQS 209
Query: 581 GFSPCIGCS 607
G IG +
Sbjct: 210 GIDQPIGAN 218
>03_05_0555 + 25555081-25555432,25555488-25555699
Length = 187
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 320 VNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEI 490
+N + + + R S + SQ GVV L + C ++ +QG++ +Q T+++
Sbjct: 11 LNRGIQQLRQEDEADLSRRSRGTRRSQAVGVVPLVDGGCGQVQQRQGIARRQPTSQV 67
>02_01_0169 -
1166683-1166790,1166981-1167043,1167376-1167447,
1167734-1167811,1168420-1168548,1169373-1169483,
1169587-1169655,1169733-1169870,1170322-1170460,
1170797-1170852,1171677-1171732,1172034-1172078,
1172225-1172303,1172770-1172864,1173074-1173449
Length = 537
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 607 GTSYARTEAIFPWCRD*LFSWRNCIKFIFIIEMYGILFSYFCGLLL 470
GT+ + PW LF+ F+ + +M+ +L YFC LL+
Sbjct: 404 GTTVGAVGTLVPWLFPSLFT----NDFMVVQQMHKVLIPYFCALLV 445
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 467 VQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSP 592
V+ T +IT++ + F+N + E L ++ +K F P
Sbjct: 202 VRARTPKITDEGKVSFENPELHSVADKIENLSSSQKKGSFKP 243
>01_01_1236 - 10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = +2
Query: 278 QNFEEIDETSSKIVVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQ 457
QN+ E+S +I N++V+ + + + E+ VVVLN+IH ++ D
Sbjct: 776 QNYTLAPESSKQIRANIKVSSTET--GVIFGNIVYETSNVMERSVVVLNDIHI-DIMDYI 832
Query: 458 GVSVQQETTEITEQNPIHFDNENEFNTVSPTEQ 556
+ + T ++N+ NTV E+
Sbjct: 833 SPATCADVTFRNMWAEFEWENKVAVNTVIQNEK 865
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,771
Number of Sequences: 37544
Number of extensions: 278220
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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