Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p06f
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY422473-1|AAR13704.1| 1326|Homo sapiens myosin tail domain-cont... 31 3.3
AL662788-1|CAI95333.1| 1326|Homo sapiens chromosome 9 open readi... 31 3.3
AL592153-1|CAI95316.1| 1326|Homo sapiens chromosome 9 open readi... 31 3.3
AL359877-3|CAI94977.1| 1326|Homo sapiens chromosome 9 open readi... 31 3.3
M73747-1|AAA70232.1| 763|Homo sapiens thyroid stimulating hormo... 30 7.6
M32215-1|AAA61236.1| 764|Homo sapiens thyroid stimulatory hormo... 30 7.6
M31774-1|AAA36783.1| 764|Homo sapiens protein ( Human thyrotrop... 30 7.6
D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein. 30 7.6
BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-co... 30 7.6
AY429111-1|AAR07906.1| 764|Homo sapiens thyroid stimulating hor... 30 7.6
AF035261-1|AAB87990.1| 470|Homo sapiens thyroid stimulating hor... 30 7.6
AC010582-1|AAF26775.1| 533|Homo sapiens TSHR protein. 30 7.6
AB209207-1|BAD92444.1| 770|Homo sapiens thyroid stimulating hor... 30 7.6
AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled co... 30 7.6
>AY422473-1|AAR13704.1| 1326|Homo sapiens myosin tail
domain-containing protein protein.
Length = 1326
Score = 31.1 bits (67), Expect = 3.3
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +2
Query: 173 SCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQ--VADIH 346
S V LER ++ L + N D N+ + L + ++ ++ +K + LQ +AD++
Sbjct: 450 SFSVVLERLRRTLTDYQNKLEDASNE--EKACNELDSTKQKIDSHTKNIKELQDKLADVN 507
Query: 347 NHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDNEN 526
S + +C+ V + N +HC E Q + E ++++ H D E
Sbjct: 508 KELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ--AFHKDAEE 565
Query: 527 EFNTVSPTEQLIAA 568
+ + Q + A
Sbjct: 566 KLTFLHTLYQHLVA 579
>AL662788-1|CAI95333.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 31.1 bits (67), Expect = 3.3
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +2
Query: 173 SCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQ--VADIH 346
S V LER ++ L + N D N+ + L + ++ ++ +K + LQ +AD++
Sbjct: 450 SFSVVLERLRRTLTDYQNKLEDASNE--EKACNELDSTKQKIDSHTKNIKELQDKLADVN 507
Query: 347 NHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDNEN 526
S + +C+ V + N +HC E Q + E ++++ H D E
Sbjct: 508 KELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ--AFHKDAEE 565
Query: 527 EFNTVSPTEQLIAA 568
+ + Q + A
Sbjct: 566 KLTFLHTLYQHLVA 579
>AL592153-1|CAI95316.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 31.1 bits (67), Expect = 3.3
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +2
Query: 173 SCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQ--VADIH 346
S V LER ++ L + N D N+ + L + ++ ++ +K + LQ +AD++
Sbjct: 450 SFSVVLERLRRTLTDYQNKLEDASNE--EKACNELDSTKQKIDSHTKNIKELQDKLADVN 507
Query: 347 NHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDNEN 526
S + +C+ V + N +HC E Q + E ++++ H D E
Sbjct: 508 KELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ--AFHKDAEE 565
Query: 527 EFNTVSPTEQLIAA 568
+ + Q + A
Sbjct: 566 KLTFLHTLYQHLVA 579
>AL359877-3|CAI94977.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 31.1 bits (67), Expect = 3.3
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +2
Query: 173 SCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGVLQNFEEIDETSSKIVVNLQ--VADIH 346
S V LER ++ L + N D N+ + L + ++ ++ +K + LQ +AD++
Sbjct: 450 SFSVVLERLRRTLTDYQNKLEDASNE--EKACNELDSTKQKIDSHTKNIKELQDKLADVN 507
Query: 347 NHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDNEN 526
S + +C+ V + N +HC E Q + E ++++ H D E
Sbjct: 508 KELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ--AFHKDAEE 565
Query: 527 EFNTVSPTEQLIAA 568
+ + Q + A
Sbjct: 566 KLTFLHTLYQHLVA 579
>M73747-1|AAA70232.1| 763|Homo sapiens thyroid stimulating hormone
receptor protein.
Length = 763
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 357 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 408
>M32215-1|AAA61236.1| 764|Homo sapiens thyroid stimulatory hormone
receptor protein.
Length = 764
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 357 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 408
>M31774-1|AAA36783.1| 764|Homo sapiens protein ( Human thyrotropin
receptor (TSH) mRNA, complete cds. ).
Length = 764
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 357 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 408
>D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.
Length = 1593
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 80 RIYVTKWLCKFIMSIKSAYLLIFQIIVIYNCSCDVSL-ERRQKLLHGFIN-YYNDLPNQV 253
R +V K C F S+K + I II CS +++L E+ QK L N Y L +
Sbjct: 825 RTFVQKEQCDFSNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLI 884
Query: 254 YKTE 265
+TE
Sbjct: 885 KETE 888
>BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-coil 1
protein.
Length = 1594
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 80 RIYVTKWLCKFIMSIKSAYLLIFQIIVIYNCSCDVSL-ERRQKLLHGFIN-YYNDLPNQV 253
R +V K C F S+K + I II CS +++L E+ QK L N Y L +
Sbjct: 823 RTFVQKEQCDFSNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLI 882
Query: 254 YKTE 265
+TE
Sbjct: 883 KETE 886
>AY429111-1|AAR07906.1| 764|Homo sapiens thyroid stimulating
hormone receptor protein.
Length = 764
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 357 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 408
>AF035261-1|AAB87990.1| 470|Homo sapiens thyroid stimulating
hormone receptor protein.
Length = 470
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 63 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 114
>AC010582-1|AAF26775.1| 533|Homo sapiens TSHR protein.
Length = 533
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 126 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 177
>AB209207-1|BAD92444.1| 770|Homo sapiens thyroid stimulating
hormone receptor variant protein.
Length = 770
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 440 ELPDQQGVSVQQETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPC 595
E + + + QE E+ FD+ ++ +E ++ P+ D F+PC
Sbjct: 363 EEQEDEIIGFGQELKNPQEETLQAFDSHYDYTICGDSEDMVCTPKSDEFNPC 414
>AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled coil
protein protein.
Length = 1594
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 80 RIYVTKWLCKFIMSIKSAYLLIFQIIVIYNCSCDVSL-ERRQKLLHGFIN-YYNDLPNQV 253
R +V K C F S+K + I II CS +++L E+ QK L N Y L +
Sbjct: 823 RTFVQKEQCDFSNSLKCTAVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLI 882
Query: 254 YKTE 265
+TE
Sbjct: 883 KETE 886
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,864,730
Number of Sequences: 237096
Number of extensions: 1632945
Number of successful extensions: 3399
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3399
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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