Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p06f
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068721-2|AAC19262.1| 396|Caenorhabditis elegans Hypothetical ... 30 1.2
Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 29 3.5
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 29 3.5
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 29 3.5
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 29 3.5
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 6.2
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ... 27 8.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF068721-2|AAC19262.1| 396|Caenorhabditis elegans Hypothetical
protein ZK1055.4 protein.
Length = 396
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 203 KLLHGFINYYNDLPNQVYKTEVGVLQNF 286
K LH F NY N LP+ + T+ G L F
Sbjct: 206 KFLHDFANYENTLPDSFHGTDNGALHFF 233
>Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical
protein T11A5.1 protein.
Length = 419
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 341 IHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITEQNPIHFDN 520
I+ HES RC QD + Q + +NE H E +++ +ET +ITE+ +
Sbjct: 169 INFHES----RCVGIAQDPEMQHLHDVNESHSSE------IAIFRETKKITERKKKKTEA 218
Query: 521 ENEFNTVSPTEQ 556
E ++ +S TE+
Sbjct: 219 EKLWDNMSLTEK 230
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 28.7 bits (61), Expect = 3.5
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Frame = -1
Query: 529 FIFIIEMYGILFSYFCGLLLNTNSLLIR*LLTVN----FIQDNHTLLL*ILYCATTP*VL 362
F+F+I + I+F GL+ + N L+ LL++ + N+ L I A V
Sbjct: 83 FVFLIPVLLIVFPLVTGLMHDVNEFLLG-LLSIQRFCLYFMPNYEKYLNISVEALNVVVR 141
Query: 361 D---*LMIMNISNLQVDYYFTRGLIDFFKIL---QNAYFGFINLIR*IIVVIYKAM*QFL 200
+ +I ++ + + Y +T ++ + ++ QN F F+ + I ++I + L
Sbjct: 142 NLYICFIIKSVMLIILPYIYTANILTYTTLILLFQN-LFVFLCALLYIPILISIRKARHL 200
Query: 199 PSFKAYIARAIINYNYLKNQQICTLYRHYEFTQPFRYINSTLIIYR 62
SFK + + I Y L +Y + F P +N ++ Y+
Sbjct: 201 SSFKLHRPQNYIMYQLLLALFAKCIYAIHIFQSPLHELNEVILKYQ 246
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 290 EIDETSSKIVVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSV 469
EIDE +V + Q+++ + ++L+ V+ + E VV +L D+Q + V
Sbjct: 82 EIDEKPEDLVKDEQISEPTDKMREEFLK----VEKTDENAVVESTSSFSPKLIDEQDLKV 137
Query: 470 QQETTEITEQNPIHFD 517
++ + E Q+P+ D
Sbjct: 138 EEMSDEKHAQSPVSSD 153
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 290 EIDETSSKIVVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSV 469
EIDE +V + Q+++ + ++L+ V+ + E VV +L D+Q + V
Sbjct: 82 EIDEKPEDLVKDEQISEPTDKMREEFLK----VEKTDENAVVESTSSFSPKLIDEQDLKV 137
Query: 470 QQETTEITEQNPIHFD 517
++ + E Q+P+ D
Sbjct: 138 EEMSDEKHAQSPVSSD 153
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 290 EIDETSSKIVVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSV 469
EIDE +V + Q+++ + ++L+ V+ + E VV +L D+Q + V
Sbjct: 82 EIDEKPEDLVKDEQISEPTDKMREEFLK----VEKTDENAVVESTSSFSPKLIDEQDLKV 137
Query: 470 QQETTEITEQNPIHFD 517
++ + E Q+P+ D
Sbjct: 138 EEMSDEKHAQSPVSSD 153
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 473 QETTEITEQNPIHFDNENEFNTVSPTEQLIAAPRKDGFSPCIGC 604
Q+ E EQ+P + N++ T P + PRK G+ P C
Sbjct: 191 QKLQENKEQDPATYINQSRLTTSKPVSKAQVPPRK-GYKPRPSC 233
>Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical
protein F35C5.3 protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.2
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Frame = +2
Query: 140 LIFQIIVIYNCSCDVSLERRQKLLHGFINYYNDLPNQVYKTEVGV-------LQNFEEID 298
L+F + V + S D + K+ F+ D NQ+ ++G LQ+ I
Sbjct: 5 LVFLLFVAFAKSADTAPVDFNKIFVTFVEELMDAINQLILEQMGAIRPSTTPLQSIPPIT 64
Query: 299 ETSSKIVVNLQVADIHNHESIKYLRCSSTVQDSQEQGV---VVLNEIHCQELPDQQGVSV 469
T + + HE+ +S ++ E V + QE QG +V
Sbjct: 65 ATDAPTTADTTAEPTKAHETTVAQEATSEGAETHETTVGQDTTVRSGESQETTVSQGTTV 124
Query: 470 QQETTEITEQNPIHFDNENEFNTVS 544
QE T E ++ TVS
Sbjct: 125 SQENTVSQETTVSQDTTVSQETTVS 149
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 405 CSCESCTVLLHLKYLIDS*L*ISATCKLTTILLEVSSISSKFCRTPTS 262
C S V K+ I S T L+ I+LEVS IS FC TS
Sbjct: 60 CQTSSTKVTATAKWSIRDDRKPSVTQNLSEIMLEVSPISRLFCPLRTS 107
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 118 HYEFTQPFRYINSTLIIYRATGYLQFRTQIASYINI 11
H F QP R++ TG+ F T + ++N+
Sbjct: 55 HESFAQPVRFVTKPPFKITETGFASFTTLVTIFLNL 90
>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
protein Y79H2A.3b protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 317 VVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITE 496
V + VA + E + C ST+ + + +NE H QE+ D+ Q TE
Sbjct: 217 VAPVVVAGKYTKEKSRAHHCESTMHQQRAAVLSAINEFHPQEIFDEFKTGESQAQLHWTE 276
Query: 497 QN 502
++
Sbjct: 277 KD 278
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 317 VVNLQVADIHNHESIKYLRCSSTVQDSQEQGVVVLNEIHCQELPDQQGVSVQQETTEITE 496
V + VA + E + C ST+ + + +NE H QE+ D+ Q TE
Sbjct: 217 VAPVVVAGKYTKEKSRAHHCESTMHQQRAAVLSAINEFHPQEIFDEFKTGESQAQLHWTE 276
Query: 497 QN 502
++
Sbjct: 277 KD 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,576
Number of Sequences: 27780
Number of extensions: 289493
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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