Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p06f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.60 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 172 AIINYNYLKNQQICTLYRHYEFTQPFRYINSTLIIYR----ATGYLQFRTQIASYI 17
           A+ NYN   N + C L   ++  Q   Y+ S L+ +     A G   FR   A ++
Sbjct: 157 AVNNYNDPSNVRNCELVGLHDLDQSQEYVRSKLVDFLNDLVAIGVAGFRVDAAKHM 212


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -1

Query: 622 YIDTCGTSYARTEA---IFPWCRD*LFSWRNCIKFIFIIEMYGILFS 491
           ++ TC   +   +    +F  C   +F W   I  IFII  Y  L S
Sbjct: 202 FLTTCSFDFLTDDEDTKVFVTC---IFIWAYVIPLIFIILFYSRLLS 245


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -1

Query: 622 YIDTCGTSYARTEA---IFPWCRD*LFSWRNCIKFIFIIEMYGILFS 491
           ++ TC   +   +    +F  C   +F W   I  IFII  Y  L S
Sbjct: 202 FLTTCSFDFLTDDEDTKVFVTC---IFIWAYVIPLIFIILFYSRLLS 245


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 540 TVLNSFSLSKCMGFCS 493
           T     S++KC GFC+
Sbjct: 59  TCSGDISVTKCEGFCN 74


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 540 TVLNSFSLSKCMGFCS 493
           T     S++KC GFC+
Sbjct: 59  TCSGDISVTKCEGFCN 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,606
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)