Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12p04f
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein par... 182 1e-45
AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. 182 1e-45
BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. 68 3e-11
AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. 68 3e-11
AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. 68 3e-11
BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein par... 30 8.4
BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein par... 30 8.4
AB023170-1|BAA76797.1| 789|Homo sapiens KIAA0953 protein protein. 30 8.4
>BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein
particle complex 1 protein.
Length = 145
Score = 182 bits (443), Expect = 1e-45
Identities = 79/144 (54%), Positives = 111/144 (77%)
Frame = +2
Query: 203 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 382
MT++NLY+FDR G L+Y EW+R KQ+G+ EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 383 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEP 562
F ++TS+Y LH ETP+G+K VMNTD +RD+L IY+ +YV+ +++NPLC +G+
Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120
Query: 563 IVSDLFKSKLDLFIKQTPIHTVRA 634
+ S+LF+S+LD +++ P + RA
Sbjct: 121 VQSELFRSRLDSYVRSLPFFSARA 144
>AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein.
Length = 145
Score = 182 bits (443), Expect = 1e-45
Identities = 79/144 (54%), Positives = 111/144 (77%)
Frame = +2
Query: 203 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 382
MT++NLY+FDR G L+Y EW+R KQ+G+ EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 383 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEP 562
F ++TS+Y LH ETP+G+K VMNTD +RD+L IY+ +YV+ +++NPLC +G+
Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120
Query: 563 IVSDLFKSKLDLFIKQTPIHTVRA 634
+ S+LF+S+LD +++ P + RA
Sbjct: 121 VQSELFRSRLDSYVRSLPFFSARA 144
>BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +2
Query: 308 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 484
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 485 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 607
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +2
Query: 308 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 484
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 485 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 607
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +2
Query: 308 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 484
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 485 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 607
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 29.9 bits (64), Expect = 8.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 392 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 562
Y T Y ++ T S +KFVM D+ +RD ++ ++ +++ Y ++ NP G+
Sbjct: 62 YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121
Query: 563 IVSDLF 580
I S F
Sbjct: 122 IQSRAF 127
>BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 29.9 bits (64), Expect = 8.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 392 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 562
Y T Y ++ T S +KFVM D+ +RD ++ ++ +++ Y ++ NP G+
Sbjct: 62 YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121
Query: 563 IVSDLF 580
I S F
Sbjct: 122 IQSRAF 127
>AB023170-1|BAA76797.1| 789|Homo sapiens KIAA0953 protein protein.
Length = 789
Score = 29.9 bits (64), Expect = 8.4
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Frame = +2
Query: 263 WNRSKQSGMSIEEEGKLMYGMLFSI-------KSFVSKISPLDPKDGFSHYKTSKYTLHC 421
W R +G+S MYG+ K V I P DP+DG K T +
Sbjct: 45 WERRSDAGLSRGARPAEMYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYA 104
Query: 422 LETPSGL 442
L P L
Sbjct: 105 LSAPEKL 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,573,856
Number of Sequences: 237096
Number of extensions: 1690409
Number of successful extensions: 2639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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