Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p04f
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical ...   115   3e-26
U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    50   1e-06
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin ...    30   1.7  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    29   2.9  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    28   5.1  
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    28   6.8  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical
           protein DC2.3b protein.
          Length = 472

 Score =  115 bits (276), Expect = 3e-26
 Identities = 52/101 (51%), Positives = 73/101 (72%)
 Frame = +2

Query: 203 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 382
           MTIYN+YIFDR G  LYY EW R+KQSG++  +E KL++GM+ S+KSFV +++  D    
Sbjct: 1   MTIYNVYIFDREGQCLYYDEWFRTKQSGLAPIQEYKLVFGMMLSMKSFVDRLATNDSNQT 60

Query: 383 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIY 505
            ++YKTS Y +  LE+ + +K ++NTD  A G+RDLL KIY
Sbjct: 61  VNYYKTSAYKMTFLESATSIKIMLNTDPNATGIRDLLHKIY 101


>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 311 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD- 487
           ++  M  S+ +   ++SP     G    +T+++ L CL++ +G+KFV+ T   +    D 
Sbjct: 115 ILSSMFHSLFTIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSAASNIAADS 174

Query: 488 LLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 610
           LL K+Y E+Y  + ++NP   +  PI +  F   +   +++
Sbjct: 175 LLSKMY-ELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 293  IEEEGKLMYGMLFSI-KSFVSKISPLDPKDGFSHYKTSKYTLHC 421
            I E G L Y  +F + ++ ++  SPL  +DG ++   S+YT  C
Sbjct: 950  ISEGGTLTYAQIFDLDETRIAWASPLIKRDGCAYPFISEYTFQC 993


>Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical
           protein T22C1.7 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 YYGEWNRSKQSGMSIEEEGKLMY 319
           Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60  YQGQWQNGKRHGLGIEQRGRWLY 82


>AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin
           protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 YYGEWNRSKQSGMSIEEEGKLMY 319
           Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60  YQGQWQNGKRHGLGIEQRGRWLY 82


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 194 LSLEYTVSRTKKITNFHKINIPDYKNNNINIFDLMNDSYFTFCYFII-CIKEENIFTLHI 18
           L+  Y + + KK       + P    +N+N+  L+N+ +F      + C++   IF L  
Sbjct: 537 LAENYIIDKLKKKIKNQHFSYPKINCSNLNLQILLNNLFFISSQIALKCVQSRPIFDLFE 596

Query: 17  VTLNK 3
           V+L++
Sbjct: 597 VSLHE 601


>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 359 SPLDPKDGFSHYKT---SKYTLHCLETPSGLKFVMNTDNQ 469
           S     DGF HYKT   +++TL C   P  +++    + +
Sbjct: 27  SSFSTTDGFFHYKTTFITEFTLQCSNNPKNIQYTAEVNGR 66


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 224 CINCKLSFFILSLEYTVSRTKKITN--FHKINIPDYKNNNINIFDLMNDSYFTFCYFIIC 51
           CI   L  F+ + ++TV    KI N    K   PD  +  IN+  ++N  YF     II 
Sbjct: 153 CIYSYLPRFLWASKFTVE--VKIINGTLTKFRYPDVMDQAINVTAVLNVVYF-ILIIIIV 209

Query: 50  IKEENI 33
           + E N+
Sbjct: 210 VSESNL 215


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -2

Query: 320 RTLICLPPL*TFQTVLNDSTHHNTIKYHIDRICINCKLSFFILSLE 183
           R+    P L TF+   ++  HH  +KYH+  +       F  ++ E
Sbjct: 184 RSATAFPSLETFEEEEHEEQHHLNVKYHLKTVAKESSKGFRRITAE 229


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 224  IFDRYGTLLYYGEWNRSKQSGMSIEEEGK 310
            + D YG  LYY +W+R       ++ +GK
Sbjct: 1409 VLDLYGRHLYYSDWHRENPYIGRVDMDGK 1437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,619
Number of Sequences: 27780
Number of extensions: 293941
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)