Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12p02f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       32   0.43 
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    29   3.0  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    27   9.2  
01_01_0418 - 3142659-3145622                                           27   9.2  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 221  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDFL 319
            Q G+LH+ ESL    +D+ G IP QE   LDFL
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 122 RKAKEDFVSFLQR*R-DQL*S*VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQE 298
           R  ++DF ++    R D       Q   GL H   QG++H+  +      DV+  I   +
Sbjct: 605 RTLRQDFETYTSSFRVDDAWRLFRQIVEGLAHVHSQGIIHRDLTPNNIFFDVRNDIKIGD 664

Query: 299 FGILDFLR 322
           FG+  FL+
Sbjct: 665 FGLAKFLK 672


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 203 GLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDFLRKNEGRSHRAVQAVLLCQR 376
           GL+H   +G+LH+         D  G +   +FG+  F   N+ + H   + V L  R
Sbjct: 294 GLEHCHNRGVLHRDIKGANLLIDNNGVLKIADFGLATFFNPNQ-KQHLTSRVVTLWYR 350


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 QQGLLHKHESLRKFHDDVQGRIPSQEFGILDFL 319
           Q G LH+ ESL    +D+ G IP QE   L FL
Sbjct: 852 QLGALHELESLDLSSNDLSGEIP-QELAQLHFL 883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,404
Number of Sequences: 37544
Number of extensions: 292933
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)