Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o21f
(586 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P25991 Cluster: Protein suppressor of forked; n=12; End... 114 1e-24
UniRef50_Q4S0X2 Cluster: Chromosome 5 SCAF14773, whole genome sh... 93 4e-18
UniRef50_Q12996 Cluster: Cleavage stimulation factor 77 kDa subu... 93 6e-18
UniRef50_Q18907 Cluster: Cleavage stimulation factor; n=4; Caeno... 87 3e-16
UniRef50_Q54LG7 Cluster: Putative uncharacterized protein; n=1; ... 80 4e-14
UniRef50_A6S390 Cluster: Putative uncharacterized protein; n=2; ... 49 9e-05
UniRef50_Q4PCV8 Cluster: mRNA 3'-end-processing protein RNA14; n... 45 0.001
UniRef50_Q5AED6 Cluster: Pre-mRNA-splicing factor CLF1; n=5; Sac... 45 0.001
UniRef50_O14233 Cluster: mRNA 3'-end-processing protein rna14; n... 44 0.002
UniRef50_Q7S1Y0 Cluster: mRNA 3'-end-processing protein rna-14; ... 43 0.005
UniRef50_Q10Q44 Cluster: Pre-mRNA processing protein prp39, puta... 42 0.008
UniRef50_A5DGP5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.008
UniRef50_Q5B3I8 Cluster: mRNA 3'-end-processing protein rna14; n... 42 0.014
UniRef50_A6RGK8 Cluster: Putative uncharacterized protein; n=1; ... 41 0.019
UniRef50_Q5M7K6 Cluster: Prpf39-prov protein; n=1; Xenopus tropi... 39 0.076
UniRef50_O64496 Cluster: F20D22.14 protein; n=17; Magnoliophyta|... 39 0.076
UniRef50_Q9FZ58 Cluster: F11A6.10 protein; n=7; Magnoliophyta|Re... 39 0.100
UniRef50_A2EJ46 Cluster: Crooked neck protein-related protein; n... 39 0.100
UniRef50_Q6C8L8 Cluster: mRNA 3'-end-processing protein RNA14; n... 38 0.17
UniRef50_Q010S4 Cluster: rRNA processing protein Rrp5; n=2; Ostr... 38 0.23
UniRef50_Q5CY48 Cluster: Crooked neck protein HAT repeats; n=2; ... 38 0.23
UniRef50_Q4IR09 Cluster: mRNA 3'-end-processing protein RNA14; n... 38 0.23
UniRef50_A2DQY1 Cluster: S1 RNA binding domain containing protei... 36 0.70
UniRef50_Q381G3 Cluster: Putative uncharacterized protein; n=4; ... 35 1.2
UniRef50_Q22V12 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_UPI00015B524D Cluster: PREDICTED: hypothetical protein;... 35 1.6
UniRef50_UPI0000498EB6 Cluster: crooked neck protein; n=2; Entam... 34 2.2
UniRef50_Q8S5Y7 Cluster: Putative crooked neck protein; n=3; Ory... 34 2.2
UniRef50_A2QIL1 Cluster: Contig An04c0140, complete genome; n=13... 34 2.2
UniRef50_P87312 Cluster: Pre-mRNA-splicing factor clf1; n=9; Fun... 34 2.2
UniRef50_Q5CR44 Cluster: Putative uncharacterized protein; n=2; ... 34 2.8
UniRef50_Q1VW99 Cluster: Putative uncharacterized protein; n=1; ... 33 3.8
UniRef50_Q54R91 Cluster: Putative uncharacterized protein; n=1; ... 33 3.8
UniRef50_Q5A014 Cluster: Potential spliceosomal U1 snRNP protein... 33 3.8
UniRef50_Q2UDF1 Cluster: RRNA processing protein Rrp5; n=11; Pez... 33 3.8
UniRef50_Q05022 Cluster: rRNA biogenesis protein RRP5; n=6; Sacc... 33 3.8
UniRef50_O13335 Cluster: Nuclear distribution protein nudE homol... 33 3.8
UniRef50_Q9FL22 Cluster: Arabidopsis thaliana genomic DNA, chrom... 33 5.0
UniRef50_A7ANA4 Cluster: Tetratricopeptide repeat domain contain... 33 5.0
UniRef50_Q22B18 Cluster: Major facilitator superfamily protein; ... 33 6.6
UniRef50_A2EV66 Cluster: Putative uncharacterized protein; n=2; ... 33 6.6
UniRef50_P25298 Cluster: mRNA 3'-end-processing protein RNA14; n... 33 6.6
UniRef50_Q4Q4M7 Cluster: Putative uncharacterized protein; n=3; ... 32 8.7
UniRef50_A3LTH8 Cluster: Part of small ribosomal subunit (SSU) p... 32 8.7
>UniRef50_P25991 Cluster: Protein suppressor of forked; n=12;
Endopterygota|Rep: Protein suppressor of forked -
Drosophila melanogaster (Fruit fly)
Length = 765
Score = 114 bits (275), Expect = 1e-24
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +1
Query: 226 DIDWGNERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWK 405
DI+WG ERL RAQ+ VE YD++SWS+++REAQ R I++VR++YE L+ FPTT RYWK
Sbjct: 11 DIEWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWK 70
Query: 406 IYIEQEMKARNFERVEKV 459
+YIE EM++R +ERVEK+
Sbjct: 71 LYIEMEMRSRYYERVEKL 88
>UniRef50_Q4S0X2 Cluster: Chromosome 5 SCAF14773, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 5
SCAF14773, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 771
Score = 93.1 bits (221), Expect = 4e-18
Identities = 35/72 (48%), Positives = 60/72 (83%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+T FP++GR+WK++IE E
Sbjct: 9 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVTQFPSSGRFWKLFIEAE 68
Query: 424 MKARNFERVEKV 459
+KA+N+++VEK+
Sbjct: 69 IKAKNYDKVEKL 80
>UniRef50_Q12996 Cluster: Cleavage stimulation factor 77 kDa
subunit; n=38; Eumetazoa|Rep: Cleavage stimulation
factor 77 kDa subunit - Homo sapiens (Human)
Length = 717
Score = 92.7 bits (220), Expect = 6e-18
Identities = 35/72 (48%), Positives = 59/72 (81%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 16 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
Query: 424 MKARNFERVEKV 459
+KA+N+++VEK+
Sbjct: 76 IKAKNYDKVEKL 87
>UniRef50_Q18907 Cluster: Cleavage stimulation factor; n=4;
Caenorhabditis|Rep: Cleavage stimulation factor -
Caenorhabditis elegans
Length = 735
Score = 87.0 bits (206), Expect = 3e-16
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNF 441
+R +E N +DVD+W+LL+RE Q+R I+ R YE L+ FP +GRYWK YIE E++++NF
Sbjct: 10 ERRIETNPFDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRSKNF 69
Query: 442 ERVEKV 459
E VEK+
Sbjct: 70 ENVEKL 75
>UniRef50_Q54LG7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1065
Score = 79.8 bits (188), Expect = 4e-14
Identities = 28/73 (38%), Positives = 53/73 (72%)
Frame = +1
Query: 241 NERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQ 420
N ++ + + ++YD ++W+LL+ E Q++ I+ R +Y++ ++ FPT GRYWK+Y+E+
Sbjct: 162 NVQIETLENRINNDMYDTEAWTLLLNEVQSQPISIARDIYKRFLSVFPTAGRYWKLYVEE 221
Query: 421 EMKARNFERVEKV 459
EMK +N++ VEK+
Sbjct: 222 EMKEKNYDIVEKI 234
>UniRef50_A6S390 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1119
Score = 48.8 bits (111), Expect = 9e-05
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 DVDSWSLLVREAQARN-INDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
D+++W L+ E + RN ++D R +YE+ + FP + W Y E E++ NF E++
Sbjct: 227 DMEAWLSLIGEHRKRNKLDDARAVYERFLKVFPHSAEIWVAYTEMELEYENFSAAEQI 284
>UniRef50_Q4PCV8 Cluster: mRNA 3'-end-processing protein RNA14; n=1;
Ustilago maydis|Rep: mRNA 3'-end-processing protein
RNA14 - Ustilago maydis (Smut fungus)
Length = 945
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 DVDSWSLLVREAQAR-NINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
D ++W L+ EAQ+R ++ R +Y++ FP R W Y++ E+ NF +VE +
Sbjct: 191 DGEAWLNLIEEAQSREDMAATRALYDRFFKVFPNQARQWLAYLDLELAHSNFAQVEAI 248
>UniRef50_Q5AED6 Cluster: Pre-mRNA-splicing factor CLF1; n=5;
Saccharomycetales|Rep: Pre-mRNA-splicing factor CLF1 -
Candida albicans (Yeast)
Length = 758
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+RA++ NI V W ++ E +NIN R + E+ I P + W +Y++ E +N
Sbjct: 145 ERALDVNIQHVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKN 204
Query: 439 FERVEKV 459
+ V V
Sbjct: 205 YPMVRAV 211
>UniRef50_O14233 Cluster: mRNA 3'-end-processing protein rna14; n=1;
Schizosaccharomyces pombe|Rep: mRNA 3'-end-processing
protein rna14 - Schizosaccharomyces pombe (Fission
yeast)
Length = 733
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 241 NERLSRAQRAVEANIYDVDSWSLLVREAQARNIND-VRTMYEKLITAFPTTGRYWKIYIE 417
N+ + + + ++ N D+ SW LV E ++ ++ +R YE+++ FP R W YI
Sbjct: 54 NDLVGQLRDKIQENPNDISSWYALVEEYGSKGKHEELRETYEQMLRPFPYVPRVWVDYIS 113
Query: 418 QEMKARNFERVE 453
E+ +F VE
Sbjct: 114 SELAFNDFHAVE 125
>UniRef50_Q7S1Y0 Cluster: mRNA 3'-end-processing protein rna-14;
n=2; Sordariales|Rep: mRNA 3'-end-processing protein
rna-14 - Neurospora crassa
Length = 1167
Score = 43.2 bits (97), Expect = 0.005
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 292 VDSWSLLVREAQARN-INDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
+++W L++E +ARN I+ R +YE+ + FP W Y++ E+ NF + E +
Sbjct: 263 MNAWLELMKEKRARNDIDGARQVYERFLAIFPQAADIWVEYLDLELSLNNFPQAEGI 319
>UniRef50_Q10Q44 Cluster: Pre-mRNA processing protein prp39,
putative, expressed; n=3; Oryza sativa|Rep: Pre-mRNA
processing protein prp39, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 789
Score = 42.3 bits (95), Expect = 0.008
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 253 SRAQRAVEANIYDVDSWSLLVREAQAR---NINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
+R AV AN D ++W+ L+ E + NI +R +Y+ + FP YWK Y + E
Sbjct: 124 ARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYADHE 183
Query: 424 MKARNFERVEKV 459
+ +V +V
Sbjct: 184 ARLDGVTKVIEV 195
>UniRef50_A5DGP5 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 701
Score = 42.3 bits (95), Expect = 0.008
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+RA+E ++ + W+ +R E RN+N R + E+ +T P + W +Y++ E +
Sbjct: 90 ERALEVDVEHIPFWTQYIRMELHHRNVNHARNLLERGVTVLPRVHKLWFMYVQTEEILGH 149
Query: 439 FERVEKV 459
++ V +
Sbjct: 150 YQAVRDI 156
>UniRef50_Q5B3I8 Cluster: mRNA 3'-end-processing protein rna14; n=8;
Eurotiomycetidae|Rep: mRNA 3'-end-processing protein
rna14 - Emericella nidulans (Aspergillus nidulans)
Length = 1141
Score = 41.5 bits (93), Expect = 0.014
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 DVDSWSLLVREAQARN-INDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
D+ +W L+ E ++RN I+ R +YE+ + FP + W Y E + R+E++
Sbjct: 321 DIPAWLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQI 378
>UniRef50_A6RGK8 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 917
Score = 41.1 bits (92), Expect = 0.019
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 187 NVNFKMASVDEIADIDWG---NERLSRAQRAVEANIY-DVDSWSLLVREAQARN-INDVR 351
+ N M+S A + G ++R+ + ++A+ D D+W L+ E ++RN + R
Sbjct: 135 SANRSMSSTPTAAALSRGRLPHDRVGILEDRIQADPRGDTDAWLELINEHRSRNKLESAR 194
Query: 352 TMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
+Y++ FP+ W Y E + R+E++
Sbjct: 195 EVYDRFFKVFPSAAEQWVAYANMESENNELYRLEQI 230
>UniRef50_Q5M7K6 Cluster: Prpf39-prov protein; n=1; Xenopus
tropicalis|Rep: Prpf39-prov protein - Xenopus tropicalis
(Western clawed frog) (Silurana tropicalis)
Length = 656
Score = 39.1 bits (87), Expect = 0.076
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 280 NIYDVDSWSLLVREAQA-RNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEK 456
N Y+ + W+ ++ + N+ R +Y+ +T FP YWK Y + E++ RN E+
Sbjct: 49 NPYNFNGWAKVLEYVETMNNLVAGRKVYDAFLTRFPYCYGYWKKYADLELQLRNTAETEE 108
Query: 457 V 459
V
Sbjct: 109 V 109
>UniRef50_O64496 Cluster: F20D22.14 protein; n=17;
Magnoliophyta|Rep: F20D22.14 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1345
Score = 39.1 bits (87), Expect = 0.076
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 256 RAQRAVEANIYDVDSWSLLVREAQA---RNINDVRTMYEKLITAFPTTGRYWKIYIEQEM 426
R V AN + ++W+ L+ E + NI +R +Y+ + FP YWK + + E
Sbjct: 88 RLWNIVRANSLEFNAWTALIDETERIAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEA 147
Query: 427 KARNFERVEKV 459
+ ++V +V
Sbjct: 148 RVGAMDKVVEV 158
>UniRef50_Q9FZ58 Cluster: F11A6.10 protein; n=7; Magnoliophyta|Rep:
F11A6.10 protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 793
Score = 38.7 bits (86), Expect = 0.100
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +1
Query: 355 MYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
+YE+L++ +PT+ R+WK Y+E +M N + +++
Sbjct: 98 IYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQI 132
>UniRef50_A2EJ46 Cluster: Crooked neck protein-related protein; n=1;
Trichomonas vaginalis G3|Rep: Crooked neck
protein-related protein - Trichomonas vaginalis G3
Length = 642
Score = 38.7 bits (86), Expect = 0.100
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 262 QRAVEANIYDVDS-WSLLV-REAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKAR 435
+RA++ Y + W+ V E + + N R +YE+ +T P +W Y + E+
Sbjct: 93 ERALKFTEYKEQTVWNCYVDMELRHKQFNYARNLYERAVTLLPRYDEFWLRYAQLEISIS 152
Query: 436 NFERVEKV 459
NFE K+
Sbjct: 153 NFENARKI 160
>UniRef50_Q6C8L8 Cluster: mRNA 3'-end-processing protein RNA14; n=1;
Yarrowia lipolytica|Rep: mRNA 3'-end-processing protein
RNA14 - Yarrowia lipolytica (Candida lipolytica)
Length = 806
Score = 37.9 bits (84), Expect = 0.17
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 271 VEANIYDVDSW-SLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFER 447
+ AN D+ +W L+ + +++ R +YE+ + +P + W YI EM F+R
Sbjct: 200 IAANPRDMPAWLDLISTIVRKEKLDESRDIYERFLALYPLSAEIWIEYITLEMDNGEFKR 259
Query: 448 VEKV 459
+E++
Sbjct: 260 LEQL 263
>UniRef50_Q010S4 Cluster: rRNA processing protein Rrp5; n=2;
Ostreococcus|Rep: rRNA processing protein Rrp5 -
Ostreococcus tauri
Length = 1947
Score = 37.5 bits (83), Expect = 0.23
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 232 DWGNERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIY 411
+W + L RA +A+ + + + E + N RTM+E ++ +P W +Y
Sbjct: 1822 EWARQLLDRATQALPKHKHIKILMRTALFEMKEGNPERGRTMFEGILRNYPRRTDIWSVY 1881
Query: 412 IEQEMKARNFERV 450
I+QE+K + R+
Sbjct: 1882 IDQEIKQGDVLRI 1894
>UniRef50_Q5CY48 Cluster: Crooked neck protein HAT repeats; n=2;
Cryptosporidium|Rep: Crooked neck protein HAT repeats -
Cryptosporidium parvum Iowa II
Length = 736
Score = 37.5 bits (83), Expect = 0.23
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+R + N +V W ++ E NIN+ R ++E++ P +W YI+ E+ +N
Sbjct: 126 ERGILVNYENVRIWREYIKLEITNGNINNARNLFERVTHLLPRIDEFWIKYIQMELILKN 185
Query: 439 FERVEKV 459
+ V +
Sbjct: 186 YINVRHI 192
>UniRef50_Q4IR09 Cluster: mRNA 3'-end-processing protein RNA14; n=2;
Sordariomycetes|Rep: mRNA 3'-end-processing protein
RNA14 - Gibberella zeae (Fusarium graminearum)
Length = 997
Score = 37.5 bits (83), Expect = 0.23
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 DVDSWS-LLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
D+D+W L+ + R+ Y + + FP W +IE E+K NF VE++
Sbjct: 179 DMDAWQELIASHRDFSPLEKARSTYNRFVEIFPQAADKWVEWIELELKYNNFVEVEQL 236
>UniRef50_A2DQY1 Cluster: S1 RNA binding domain containing protein;
n=1; Trichomonas vaginalis G3|Rep: S1 RNA binding domain
containing protein - Trichomonas vaginalis G3
Length = 1601
Score = 35.9 bits (79), Expect = 0.70
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Frame = +1
Query: 349 RTMYEKLITAFPTTGRYWKIYIEQE------MKARN-FERVEKVSIQ 468
RTM+E LI FPT + W Y++ E +KARN FER+ + ++
Sbjct: 1511 RTMFENLINEFPTKYQLWNAYVDAECKYGEHLKARNIFERMTTLDLK 1557
>UniRef50_Q381G3 Cluster: Putative uncharacterized protein; n=4;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 973
Score = 35.1 bits (77), Expect = 1.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 271 VEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEM 426
V N+Y V SW L+ IN VR ++ FPT+G Y+ +E+
Sbjct: 185 VNKNVYSVSSWISLLNSLDEYPINAVRHVWHAATFFFPTSGPLVTYYLRKEI 236
>UniRef50_Q22V12 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 385
Score = 35.1 bits (77), Expect = 1.2
Identities = 22/96 (22%), Positives = 49/96 (51%)
Frame = +1
Query: 166 KTR*ITSNVNFKMASVDEIADIDWGNERLSRAQRAVEANIYDVDSWSLLVREAQARNIND 345
K + + N+ F+ S +EI + +++ R +E NI +S+ + Q +NI
Sbjct: 251 KLKSLDQNIQFEWKSFEEIQN----GIQINFDPRTLEKNIIFTKGFSIPEQRIQLQNIKS 306
Query: 346 VRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVE 453
+ + ++ +F G +IY+E KA+N+++++
Sbjct: 307 NYSWWVQIQESFSNGGNR-QIYLESNKKAKNYDKLD 341
>UniRef50_UPI00015B524D Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1072
Score = 34.7 bits (76), Expect = 1.6
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 250 LSRAQRAVEANIYDVDSWSLLVREAQARNINDV-RTMYEKLITAFPTTGRYWKIYIEQEM 426
L + +AV + D W+ L++ N + R Y K + +P YW+ Y + E
Sbjct: 450 LEKYWKAVNDDPADFTGWTYLLQYVDQENDAEAAREAYNKFLERYPYCYGYWRKYADYEK 509
Query: 427 KARNFERVEKV 459
K + +RV+ V
Sbjct: 510 KKGDPDRVQTV 520
>UniRef50_UPI0000498EB6 Cluster: crooked neck protein; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: crooked neck
protein - Entamoeba histolytica HM-1:IMSS
Length = 461
Score = 34.3 bits (75), Expect = 2.2
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+RA+E + D+W V E + +N R + E+ + P + W Y+ E N
Sbjct: 93 ERALEQDYTIADTWMKYVDFELRNNQVNKARNILERATSLLPMVYKLWFKYVRLEETVEN 152
Query: 439 FERVEKV 459
F+ ++V
Sbjct: 153 FDHCKEV 159
>UniRef50_Q8S5Y7 Cluster: Putative crooked neck protein; n=3; Oryza
sativa|Rep: Putative crooked neck protein - Oryza sativa
subsp. japonica (Rice)
Length = 711
Score = 34.3 bits (75), Expect = 2.2
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNIND---VRTMYEKLITAFPTTG-----RY 399
+R S+ +RAV N D+W L+R ++ N D +R +Y + + P R+
Sbjct: 328 KRRSQYERAVTTNPLCYDAWFDLIRLEESANTGDANRIRDLYRRAVANVPPAAAAAEKRH 387
Query: 400 WKIYIEQEMKARNFERVEKVSIQR 471
W+ YI + FE ++ + R
Sbjct: 388 WRRYIYLWINYALFEELDAEDVAR 411
>UniRef50_A2QIL1 Cluster: Contig An04c0140, complete genome; n=13;
Pezizomycotina|Rep: Contig An04c0140, complete genome -
Aspergillus niger
Length = 591
Score = 34.3 bits (75), Expect = 2.2
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Frame = +1
Query: 220 IADIDWGNERLSRAQ-RAVEANIYD----VDSWSLLVREAQA------RNIND-----VR 351
+AD ++G A+ + +E + D ++W LVR +A RN N VR
Sbjct: 1 MADYNYGGSEEENAELKKLETELLDDPDNFETWEKLVRAGEALEGGINRNSNPQAITTVR 60
Query: 352 TMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
+Y++ + FP YWK Y + E E + V
Sbjct: 61 NVYDRFLAKFPLLFGYWKKYADLEFSITGTEAADMV 96
>UniRef50_P87312 Cluster: Pre-mRNA-splicing factor clf1; n=9;
Fungi/Metazoa group|Rep: Pre-mRNA-splicing factor clf1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 674
Score = 34.3 bits (75), Expect = 2.2
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+RA++ + + W + E + RNIN R ++++ +T P + W Y+ E N
Sbjct: 94 ERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGN 153
Query: 439 FERVEKV 459
+V
Sbjct: 154 ITGCRQV 160
>UniRef50_Q5CR44 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 776
Score = 33.9 bits (74), Expect = 2.8
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = -2
Query: 474 LSLYTDLFDSFKIS-----RFHLLFDIYFPVTSCGRECRYQLLVHGSDIV 340
+SLY +LFD F S R+ +LF++YF + ++ ++ L+H ++++
Sbjct: 595 ISLYKNLFDKFTRSLNECYRYSVLFNLYFDLMEFQKDLLFKNLIHSANVI 644
>UniRef50_Q1VW99 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 252
Score = 33.5 bits (73), Expect = 3.8
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = -1
Query: 514 IVNITDSFVFFKLTLFVY*PFRLFQNFSLSSPVRYIFSSNVLWSGMPLSTSRTWFGHR*C 335
IV SF+FFK L R ++ +L+ V +++ S ++W MP +W GH
Sbjct: 124 IVYFLASFLFFKGILS-----RNYRLVALALIVVFLYGS-LVWGTMPGEPGISWEGHLSG 177
Query: 334 FGPGLLLLAMTKSPH 290
F G LL KS H
Sbjct: 178 FSSGFLLSFFLKSSH 192
>UniRef50_Q54R91 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 699
Score = 33.5 bits (73), Expect = 3.8
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 265 RAVEANIYDVDSWSLLVREAQARN-INDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+ V+ N + W+ L+ + N I +R +Y + + FP YWK + + E N
Sbjct: 29 KIVQTNPLAFNQWTFLIGVIEKTNDIEKIRKVYSEFLNEFPLCFLYWKRFADHEYAHNN 87
>UniRef50_Q5A014 Cluster: Potential spliceosomal U1 snRNP protein;
n=1; Candida albicans|Rep: Potential spliceosomal U1
snRNP protein - Candida albicans (Yeast)
Length = 393
Score = 33.5 bits (73), Expect = 3.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 316 REAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKVSIQ 468
+ +N +RT Y + FP +YW Y E E K N E++ ++
Sbjct: 42 KSTSEEELNVLRTSYNSFLEKFPFQFKYWIRYAEWEFKLGNTSTAEQIYLR 92
>UniRef50_Q2UDF1 Cluster: RRNA processing protein Rrp5; n=11;
Pezizomycotina|Rep: RRNA processing protein Rrp5 -
Aspergillus oryzae
Length = 1827
Score = 33.5 bits (73), Expect = 3.8
Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +1
Query: 190 VNFKMASVDEIADIDWGNERLSRAQRAVEANIY--DVDSWSLLVREAQARNINDVRTMYE 363
+N+ D +A + G L RA +++ ++ + ++ L ++ ++ RT++E
Sbjct: 1666 LNYASFLFDNMAAPERGRALLPRALQSLPSHTHVETTSKFAQLEFRSEHGDVERGRTVFE 1725
Query: 364 KLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
L+++FP W I ++ E+K + E+V ++
Sbjct: 1726 GLLSSFPKRIDLWNILLDLEIKNGDAEQVRRL 1757
>UniRef50_Q05022 Cluster: rRNA biogenesis protein RRP5; n=6;
Saccharomycetales|Rep: rRNA biogenesis protein RRP5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 1729
Score = 33.5 bits (73), Expect = 3.8
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 349 RTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVE 453
R+++E L+ P W +Y++QE+KA++ ++VE
Sbjct: 1638 RSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVE 1672
>UniRef50_O13335 Cluster: Nuclear distribution protein nudE homolog
1; n=2; Pezizomycotina|Rep: Nuclear distribution protein
nudE homolog 1 - Neurospora crassa
Length = 697
Score = 33.5 bits (73), Expect = 3.8
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 226 DIDWGNERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWK 405
D+D ++R Q+ E Y+V+ W +E+++ N ++ EK ITA T R +
Sbjct: 51 DLDAADKRERALQQKAEGLSYEVEEWKRKYKESKS-EANAAQSALEKEITALRETNRTLQ 109
Query: 406 IYIEQ-EMKARNFER 447
+ + E+ +FER
Sbjct: 110 LKLRDIEVANDDFER 124
>UniRef50_Q9FL22 Cluster: Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone:MPL12; n=2; Arabidopsis
thaliana|Rep: Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone:MPL12 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1022
Score = 33.1 bits (72), Expect = 5.0
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 256 RAQRAVEANIYDVDSWSLLVREAQARNIND----VRTMYEKLITAFPTTGRYWKIYIEQE 423
R + + D D W+LL+ E + + D + +Y+ + FP YW+ Y +
Sbjct: 33 RLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHK 92
Query: 424 MKARNFERVEKV 459
+K E +V
Sbjct: 93 IKLCTLEDAVEV 104
>UniRef50_A7ANA4 Cluster: Tetratricopeptide repeat domain containing
protein; n=3; Piroplasmida|Rep: Tetratricopeptide repeat
domain containing protein - Babesia bovis
Length = 665
Score = 33.1 bits (72), Expect = 5.0
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
+RA++ + +V+ W + E + +N+N R +++++++ P ++W Y E N
Sbjct: 97 ERALQVDPNNVNLWLRYIETEMKNKNVNAARNLFDRVVSLLPRVDQFWFKYAHFEELLGN 156
Query: 439 F 441
+
Sbjct: 157 Y 157
>UniRef50_Q22B18 Cluster: Major facilitator superfamily protein;
n=6; Tetrahymena thermophila SB210|Rep: Major
facilitator superfamily protein - Tetrahymena
thermophila SB210
Length = 531
Score = 32.7 bits (71), Expect = 6.6
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 508 NITDSFVFFKLTLFVY*PFRLFQNFSLSSPVRYIFSSNVLWS-GMPLSTSRTWFGH 344
N+T F FF LF Y F NF++ PV I +S++L G S W GH
Sbjct: 398 NLTLQFTFFMFLLFFYASF----NFTI-GPVTVILTSDILKDRGFSYSIMANWLGH 448
>UniRef50_A2EV66 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1300
Score = 32.7 bits (71), Expect = 6.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 494 LCFF*TYSLCILTFSTLSKFLAFISCSIYIFQ*RPVVGN 378
L FF +Y+ C+ +S SKF+ F + ++YI Q P++ N
Sbjct: 777 LPFFISYAYCLDLYSVSSKFVQFNTNTLYISQIVPMIAN 815
>UniRef50_P25298 Cluster: mRNA 3'-end-processing protein RNA14; n=4;
Saccharomycetales|Rep: mRNA 3'-end-processing protein
RNA14 - Saccharomyces cerevisiae (Baker's yeast)
Length = 677
Score = 32.7 bits (71), Expect = 6.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 RAQRAVEANIYDVDSWSLLVREAQAR-NINDVRTMYEKLITAFPTTGRYWKIYIEQEMKA 432
R + ++ N ++ S+ L++ + + + VR +YE+ FP W + ++ E+
Sbjct: 30 RLRERIKDNPTNILSYFQLIQYLETQESYAKVREVYEQFHNTFPFYSPAWTLQLKGELAR 89
Query: 433 RNFERVEKVSIQ 468
FE VEK+ Q
Sbjct: 90 DEFETVEKILAQ 101
>UniRef50_Q4Q4M7 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 994
Score = 32.3 bits (70), Expect = 8.7
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 217 EIADIDWGNERLSRAQ--RAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTT 390
E A ++ N +S Q + V N +D +W L+ + + ++ VR ++ + FPT
Sbjct: 172 EKAQLEVPNATVSILQNTKRVYTNTFDTMAWLHLLHQMMSFPVSSVRAVWHAALYHFPTA 231
Query: 391 GRYWKIYIEQEMKA 432
+Y+ EM A
Sbjct: 232 APLVCVYVRLEMAA 245
>UniRef50_A3LTH8 Cluster: Part of small ribosomal subunit (SSU)
processosome; n=2; Saccharomycetaceae|Rep: Part of small
ribosomal subunit (SSU) processosome - Pichia stipitis
(Yeast)
Length = 1699
Score = 32.3 bits (70), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 349 RTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
R+++E L+ P W +Y++QE+K N +VE +
Sbjct: 1614 RSLFEGLVADAPKRIDLWNVYVDQEIKQDNKSKVEDI 1650
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,114,639
Number of Sequences: 1657284
Number of extensions: 11818666
Number of successful extensions: 32054
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 31036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32030
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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