Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o21f
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    44   1e-05
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    34   0.013
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    30   0.29 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   0.87 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   2.7  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   3.5  
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    25   6.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   6.2  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 241 NERLSRAQRAVEANIYDVDSWSLLVREAQARNIND-VRTMYEKLITAFPTTGRYWKIYIE 417
           N+ + + +  ++ N  D+ SW  LV E  ++  ++ +R  YE+++  FP   R W  YI 
Sbjct: 54  NDLVGQLRDKIQENPNDISSWYALVEEYGSKGKHEELRETYEQMLRPFPYVPRVWVDYIS 113

Query: 418 QEMKARNFERVE 453
            E+   +F  VE
Sbjct: 114 SELAFNDFHAVE 125


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
           +RA++ +   +  W   +  E + RNIN  R ++++ +T  P   + W  Y+  E    N
Sbjct: 94  ERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGN 153

Query: 439 FERVEKV 459
                +V
Sbjct: 154 ITGCRQV 160



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 319 EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
           E   +     R+++E+ +    T    W  YIE EMK RN      +
Sbjct: 80  ELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNL 126


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 325 QARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKAR 435
           Q  N+  VR  +EK +T F      W++YI  E K R
Sbjct: 786 QFYNLPKVRPFFEKGVTLFSANTAIWEVYIFFESKLR 822


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 349  RTMYEKLITAFPTTGRYWKIYIEQEMK 429
            RT++E L++++P     W + I+ EMK
Sbjct: 1602 RTIFEGLLSSYPKRLDLWNVLIDMEMK 1628


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = +1

Query: 286 YDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIE 417
           Y + SW   ++  +   +     ++E+  +  P + + WK Y+E
Sbjct: 30  YSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLE 73


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 507 ISQIALFFLNLLSLYTDLFDSFKISRFHLL 418
           + Q++  + NLL+L + + D  K SR+H L
Sbjct: 322 VHQLSSSYTNLLNLRSAICDWLKFSRYHYL 351


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 366 VDNGIPDHRTLLENIYRTG 422
           V  GIP+H+T+ E IY+ G
Sbjct: 141 VTYGIPNHKTVRELIYKRG 159


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 352 TMYEKLITAFPTTGRYWKIYIEQEMK 429
           T YE+ ITAF     Y KI++E+  K
Sbjct: 451 TKYEQKITAFKHAHIYDKIFLEEARK 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,327
Number of Sequences: 5004
Number of extensions: 52150
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)