Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o21f
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798... 57 1e-08
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 42 3e-04
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 38 0.008
10_05_0065 + 8736744-8738879 34 0.072
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 28 6.3
03_02_0761 - 10963045-10963482,10963713-10963889,10964151-109642... 28 6.3
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 27 8.3
03_02_0383 + 7966929-7968951,7969085-7969104 27 8.3
>12_02_0841 +
23579344-23579394,23579522-23579584,23579717-23579826,
23580220-23580320,23580816-23580877,23580972-23581112,
23581388-23581523,23582257-23582284,23582665-23582728,
23582924-23583044,23583565-23583623,23583716-23583784,
23583875-23584015,23584130-23584194,23584345-23584441,
23584803-23584862,23585409-23585561,23586022-23586088,
23586174-23586284,23586689-23586799,23587370-23587567,
23587679-23587860
Length = 729
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = +1
Query: 280 NIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
+IY+V++ +L EAQ I + +YEKL++ FPT +YWK Y+E M A++ E +++
Sbjct: 2 DIYNVEAAEILANEAQLLPIGEAAPIYEKLLSTFPTAAKYWKQYVEAYMSAKDDEATKQI 61
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 253 SRAQRAVEANIYDVDSWSLLVREAQAR---NINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
+R AV AN D ++W+ L+ E + NI +R +Y+ + FP YWK Y + E
Sbjct: 124 ARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRKVYDAFLAEFPLCFGYWKKYADHE 183
Query: 424 MKARNFERVEKV 459
+ +V +V
Sbjct: 184 ARLDGVTKVIEV 195
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 274 EANIYDVDSWSLLVREAQARNINDVRT---MYEKLITAFPTTGRYWKIYIEQEMKARNFE 444
++N +D D+W L++ A+ ++ND+ +Y + FP YW Y + + +
Sbjct: 45 DSNRHDFDAWVSLIKAAEETSMNDIEVIDLVYHSFLLEFPLCYGYWIKYAAHKARLCTNK 104
Query: 445 RVEKV 459
+VE+V
Sbjct: 105 QVEEV 109
>10_05_0065 + 8736744-8738879
Length = 711
Score = 34.3 bits (75), Expect = 0.072
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNIND---VRTMYEKLITAFPTTG-----RY 399
+R S+ +RAV N D+W L+R ++ N D +R +Y + + P R+
Sbjct: 328 KRRSQYERAVTTNPLCYDAWFDLIRLEESANTGDANRIRDLYRRAVANVPPAAAAAEKRH 387
Query: 400 WKIYIEQEMKARNFERVEKVSIQR 471
W+ YI + FE ++ + R
Sbjct: 388 WRRYIYLWINYALFEELDAEDVAR 411
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 334 NINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 459
N + RT+YEK I P W+ Y E E +R +
Sbjct: 486 NFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSI 527
>03_02_0761 -
10963045-10963482,10963713-10963889,10964151-10964261,
10964982-10965227,10965571-10965630,10965729-10966034,
10966626-10966769,10966994-10967392
Length = 626
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 438
Q+A + N SW + E +A N R ++EK + A P W ++ E + +
Sbjct: 269 QQATQCNPKSCASWLAWAQVEIRAENNAMARKLFEKAVQASPKNRFSWHVWALFEAEQGS 328
Query: 439 FERVEKV 459
++ K+
Sbjct: 329 IDKARKL 335
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 208 SVDEIADIDWGNERLSRAQRAVEANIYDVDSWSLLVREAQAR 333
+VD+ + D+G E++S V N D + W + EA R
Sbjct: 777 TVDQFGNFDFGLEKISVEHLDVCVNYSDANRWEVNAAEAAIR 818
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 338 MFRAWASLTSNDQESTSYMLASTARWARDRRS---LPQSMSAISSTDAI 201
M ++W+ +SN S + + R +RD S +P+S A+SST ++
Sbjct: 486 MMKSWSRRSSNGNGSIDWWIDGVRRSSRDWASGEFVPKSGGAVSSTPSM 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,952
Number of Sequences: 37544
Number of extensions: 307489
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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