Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o21f
(586 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15782-1|AAA61417.1| 717|Homo sapiens cleavage stimulation fact... 93 9e-19
BC108319-1|AAI08320.1| 717|Homo sapiens cleavage stimulation fa... 93 9e-19
AL121926-1|CAC48252.1| 708|Homo sapiens dJ85M6.1 (cleavage stim... 93 9e-19
BC059948-1|AAH59948.1| 103|Homo sapiens cleavage stimulation fa... 77 5e-14
BC009792-1|AAH09792.1| 103|Homo sapiens cleavage stimulation fa... 77 5e-14
BC034950-1|AAH34950.1| 729|Homo sapiens TANK-binding kinase 1 p... 31 3.0
AK002192-1|BAA92129.1| 316|Homo sapiens protein ( Homo sapiens ... 31 3.0
AF191838-1|AAF05989.1| 729|Homo sapiens TANK binding kinase TBK... 31 3.0
AF174536-1|AAF69106.1| 729|Homo sapiens NF-kB-activating kinase... 31 3.0
>U15782-1|AAA61417.1| 717|Homo sapiens cleavage stimulation factor
77kDa subunit protein.
Length = 717
Score = 92.7 bits (220), Expect = 9e-19
Identities = 35/72 (48%), Positives = 59/72 (81%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 16 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
Query: 424 MKARNFERVEKV 459
+KA+N+++VEK+
Sbjct: 76 IKAKNYDKVEKL 87
>BC108319-1|AAI08320.1| 717|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 717
Score = 92.7 bits (220), Expect = 9e-19
Identities = 35/72 (48%), Positives = 59/72 (81%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 16 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
Query: 424 MKARNFERVEKV 459
+KA+N+++VEK+
Sbjct: 76 IKAKNYDKVEKL 87
>AL121926-1|CAC48252.1| 708|Homo sapiens dJ85M6.1 (cleavage
stimulation factor, 3' pre-RNA, subunit 3, 77kD)
protein.
Length = 708
Score = 92.7 bits (220), Expect = 9e-19
Identities = 35/72 (48%), Positives = 59/72 (81%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 7 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 66
Query: 424 MKARNFERVEKV 459
+KA+N+++VEK+
Sbjct: 67 IKAKNYDKVEKL 78
>BC059948-1|AAH59948.1| 103|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 103
Score = 77.0 bits (181), Expect = 5e-14
Identities = 29/61 (47%), Positives = 48/61 (78%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 16 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
Query: 424 M 426
+
Sbjct: 76 V 76
>BC009792-1|AAH09792.1| 103|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 3, 77kDa protein.
Length = 103
Score = 77.0 bits (181), Expect = 5e-14
Identities = 29/61 (47%), Positives = 48/61 (78%)
Frame = +1
Query: 244 ERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQE 423
E++ +A++ +E N YD+D+WS+L+REAQ + I+ R YE+L+ FP++GR+WK+YIE E
Sbjct: 16 EKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
Query: 424 M 426
+
Sbjct: 76 V 76
>BC034950-1|AAH34950.1| 729|Homo sapiens TANK-binding kinase 1
protein.
Length = 729
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 190 VNFKMASVDEIADIDWGNERLSRAQRAVEANIYDVDS 300
+N + A + EI+DI RLS +Q +E ++ D+DS
Sbjct: 488 INLEAAELGEISDIHTKLLRLSSSQGTIETSLQDIDS 524
>AK002192-1|BAA92129.1| 316|Homo sapiens protein ( Homo sapiens
cDNA FLJ11330 fis, clone PLACE1010529. ).
Length = 316
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 190 VNFKMASVDEIADIDWGNERLSRAQRAVEANIYDVDS 300
+N + A + EI+DI RLS +Q +E ++ D+DS
Sbjct: 75 INLEAAELGEISDIHTKLLRLSSSQGTIETSLQDIDS 111
>AF191838-1|AAF05989.1| 729|Homo sapiens TANK binding kinase TBK1
protein.
Length = 729
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 190 VNFKMASVDEIADIDWGNERLSRAQRAVEANIYDVDS 300
+N + A + EI+DI RLS +Q +E ++ D+DS
Sbjct: 488 INLEAAELGEISDIHTKLLRLSSSQGTIETSLQDIDS 524
>AF174536-1|AAF69106.1| 729|Homo sapiens NF-kB-activating kinase
NAK protein.
Length = 729
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 190 VNFKMASVDEIADIDWGNERLSRAQRAVEANIYDVDS 300
+N + A + EI+DI RLS +Q +E ++ D+DS
Sbjct: 488 INLEAAELGEISDIHTKLLRLSSSQGTIETSLQDIDS 524
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,404,058
Number of Sequences: 237096
Number of extensions: 1779674
Number of successful extensions: 3684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3684
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -