Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o20r
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 244 6e-65
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 244 8e-65
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 241 4e-64
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 239 2e-63
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 234 5e-62
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 132 2e-31
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 132 2e-31
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 6.8
06_03_1221 - 28514952-28518152 28 6.8
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 6.8
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 244 bits (597), Expect = 6e-65
Identities = 117/175 (66%), Positives = 139/175 (79%)
Frame = -1
Query: 741 LPHLQXVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 562
L L VIHDNF I+EGLM VDGPS K WR GR A NIIP+STGAAKA
Sbjct: 182 LAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 241
Query: 561 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGY 382
VGKV+P LNGKLTGM+FRVP +VSVVDLTVR+ K ASY+AIK +K A+EG LKGI+GY
Sbjct: 242 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGY 301
Query: 381 TEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 217
E+ +VS+DF+GDS SSIFDA AGI+LNDNFVKL++WYDNE+GYS+RVIDLI+++
Sbjct: 302 VEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHM 356
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 244 bits (596), Expect = 8e-65
Identities = 120/175 (68%), Positives = 138/175 (78%)
Frame = -1
Query: 741 LPHLQXVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 562
L L VI+D F IVEGLM VDGPS K WR GR A NIIP+STGAAKA
Sbjct: 207 LAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA 266
Query: 561 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGY 382
VGKV+PALNGKLTGMAFRVP +VSVVDLTVRL KPASY+ IK +KE +EG LKGILGY
Sbjct: 267 VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGY 326
Query: 381 TEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 217
E+ +VS+DF GD+ SSIFDA AGI+LNDNFVKL+SWYDNE+GYSSRV+DLI+++
Sbjct: 327 VEEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVVDLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 241 bits (590), Expect = 4e-64
Identities = 121/177 (68%), Positives = 138/177 (77%)
Frame = -1
Query: 741 LPHLQXVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 562
L L VI+D F IVEGLM VDGPS K WR GR A NIIP+STGAAKA
Sbjct: 178 LAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 237
Query: 561 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGY 382
VGKV+PALNGKLTGMAFRVP +VSVVDLTVRL KPASY+ IK +KE AEG LKGILGY
Sbjct: 238 VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEEAEGKLKGILGY 297
Query: 381 TEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQS 211
E+ +VS+DF GDS SSIFDA AGI+L+D FVKL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 298 VEEDLVSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVIDLIRHMHS 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 239 bits (585), Expect = 2e-63
Identities = 116/175 (66%), Positives = 137/175 (78%)
Frame = -1
Query: 741 LPHLQXVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 562
L L ++H+ F I EGLM VDGPS K WR GRGA QNIIP+STGAAKA
Sbjct: 234 LAPLAKIVHEEFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKA 293
Query: 561 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGY 382
VGKV+PALNGKLTGMAFRVP NVSVVDLT RL K ASYE +K +KEA+EG LKGILGY
Sbjct: 294 VGKVLPALNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKEASEGSLKGILGY 353
Query: 381 TEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 217
T++ VVS+DFIGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 354 TDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 234 bits (573), Expect = 5e-62
Identities = 113/175 (64%), Positives = 136/175 (77%)
Frame = -1
Query: 741 LPHLQXVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 562
L L V+H+ F IVEGLM VDGPS K WR GRGA QNIIP+STGAAKA
Sbjct: 293 LAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKA 352
Query: 561 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGY 382
VGKV+P LNGKLTGMAFRVP NVSVVDLT R+ K ASY+ +K +K A+EG LKGILGY
Sbjct: 353 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAAIKAASEGALKGILGY 412
Query: 381 TEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 217
T++ VVS+DF+GD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 413 TDEDVVSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 132 bits (320), Expect = 2e-31
Identities = 71/172 (41%), Positives = 98/172 (56%)
Frame = -1
Query: 723 VIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIP 544
++ F I++G M +D L R R A NI+P STGAAKAV V+P
Sbjct: 230 ILDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVPTSTGAAKAVALVLP 288
Query: 543 ALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVV 364
L GKL G+A RVP NVSVVDL V++ K E + Q +++A LKGIL + +V
Sbjct: 289 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDSAANELKGILEVCDVPLV 348
Query: 363 SSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 208
S DF S DA+ + + D+ VK+I+WYDNE+GYS RV+DL + ++
Sbjct: 349 SVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 132 bits (320), Expect = 2e-31
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Frame = -1
Query: 723 VIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIP 544
++ + F IV+G M +D L R R A NI+P STGAAKAV V+P
Sbjct: 242 ILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVPTSTGAAKAVALVLP 300
Query: 543 ALNGKLTGMAFRVPVANVSVVDLTVRLGKPA-SYEAIKQKVKEAAEGPLKGILGYTEDQV 367
L GKL G+A RVP NVSVVDL + K + + + ++AA GPL GIL + +
Sbjct: 301 QLKGKLNGIALRVPTPNVSVVDLVINTVKTGITADDVNAAFRKAAAGPLSGILDVCDVPL 360
Query: 366 VSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 208
VS DF SS DA+ + + D+ VK+++WYDNE+GYS RV+DL + SK
Sbjct: 361 VSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASK 413
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 257 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 355
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.3 bits (60), Expect = 6.8
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -1
Query: 645 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 472
DG +LW GRG I P A+ A + +L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
Query: 471 VRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAG-ISLN 298
S E V AA +G L V S+ G S+I++ +SLN
Sbjct: 130 Y---NRLSGELPNAPVAAAAATNARGSLSLQVLDVSSNLLAGRFPSAIWEHTPRLVSLN 185
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 603 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 424
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 423 KEAAEGPL-KGI 391
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,885,293
Number of Sequences: 37544
Number of extensions: 323324
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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