Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o17r
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   1.2  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    27   2.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.5  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.7  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   4.7  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.1  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = -2

Query: 706 DALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLRARA--GEWDTQTIKEMLDHQVR--L 539
           + L ++   V   IHPQV++ G  IA K A   LRA +     D    +  L++  R  L
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIARTTL 163

Query: 538 VEEIIIHEDFNTKSLKNDVALLRMHAPFNLAEHINMI 428
             +I+     +   L  D A+LR+    NL ++I +I
Sbjct: 164 SSKILSQNKNHFAQLAVD-AVLRLKGSTNL-DNIQII 198


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/44 (20%), Positives = 18/44 (40%)
 Frame = -2

Query: 133 AGLVAWGIGCGQKDVPAVYANVARMRSWVDRKMNAWGYGTTTYT 2
           A  V WG+  G++ + +        ++W+      WG     Y+
Sbjct: 558 ASAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWGEWANLYS 601


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 499 SLKNDVALLRMHAPFNLAEHINMICLPDPGDSFDTSKN 386
           S  N   + R+HA + L +  ++ICL    +  +T KN
Sbjct: 845 SALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKN 882


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -1

Query: 212  TGGQGHLPG--RRWSPPGLSHR*QPLQ--VGRAGRLGHRVRAEGRARGLRQRGP 63
            TGG GH+PG   + + P   H     +  + +A      +RA  R   LRQR P
Sbjct: 1574 TGGLGHMPGWWFQMASPNTGHLLTQFENAITKALHSNGELRARLRVEALRQRFP 1627


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 371 AVGDAVLAGVEAIPRVREADHVDVLGEVEGRVHPQERHVVLKAFRVEIFVY 523
           +  +A    + AIP   E D  +   E +G++  +E+ V       EIF Y
Sbjct: 837 SASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGDVVFSEIFSY 887


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 427 CLPDPGDSFD-TSKNCVA 377
           C+P+PG +FD   K+CV+
Sbjct: 49  CIPEPGSTFDPNEKSCVS 66


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 220 RTRNCRADGTWSQVW 264
           RTR    DG W++VW
Sbjct: 649 RTRESEVDGEWTRVW 663


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 408  SPGSGRQIMLMCSARLKGACIRRSATSFLRLFVLKSSCMI 527
            S G    I+ +C   LKG+C R     +L+ F  ++  MI
Sbjct: 882  STGGYENILNICEKYLKGSCSRLEFRKYLQKFNNETCYMI 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,219
Number of Sequences: 5004
Number of extensions: 65339
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)