Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o17r
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 54 1e-09
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 28 0.076
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 27 0.13
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 23 2.9
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 5.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.0
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 8.8
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 21 8.8
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 8.8
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 54.4 bits (125), Expect = 1e-09
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
Frame = -2
Query: 670 LIHPQVVMTGAHIAYKYAPGNLRARAGEWDTQTIKEMLDHQVRLVEEIIIHEDFNTKSLK 491
+I + V+T AH L GE D + E + + ++IIH ++
Sbjct: 192 IISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKD 251
Query: 490 ----NDVALLRMHAPFNLAEHINMICLPDPG--DSFDTSKNCVANGWGKDVFGLQGRYAV 329
ND+ALL+ + + CLP DSF S V GWG F G +
Sbjct: 252 DWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL-GWGHTSF--NGMLSH 308
Query: 328 ILKKIEIDMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGRDTCQGDGGAPLACP-IG 152
IL+K ++M+ C + +CA +G+D CQ D G P+
Sbjct: 309 ILQKTTLNMLTQVECYKYYGNIMVNA--------MCAYA-KGKDACQMDSGGPVLWQNPR 359
Query: 151 DSRYKLAGLVAWGIGCGQ 98
R G+++WG CG+
Sbjct: 360 TKRLVNIGIISWGAECGK 377
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 28.3 bits (60), Expect = 0.076
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +2
Query: 488 VLKAFRVEIFVYDYFLDESHLVVQHFL--DGLGVPFS--GSRPQIARGVLVSDVSA--SH 649
V FR + +YD+F D S + HF D L + G + Q G+ +S H
Sbjct: 327 VSDVFRYGLLIYDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALSPVDIH 386
Query: 650 DDLRMYQDSYSSVR 691
DD ++ SS R
Sbjct: 387 DDRTLFFHPMSSFR 400
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 27.5 bits (58), Expect = 0.13
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 108 PMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPP 218
P A P SP RG+PP+P Q P PP
Sbjct: 16 PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52
Score = 25.8 bits (54), Expect = 0.41
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 461 RVHPQERHVVLKAFRVEIFVYDYFLDESHLVVQHFLDGLGVPFSGSRPQI 610
+VHP H V K E+ DY HL +H LD + R Q+
Sbjct: 273 KVHPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQV 322
Score = 25.4 bits (53), Expect = 0.54
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +3
Query: 102 PHPMPQAT---SPANL*RLSPMGQARGAPPS--PWQVSLPSCPPAHTKLSCRRNLVPSLV 266
PH PQA SP N + P G GAPPS P Q+ + H + + S
Sbjct: 27 PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPT 86
Query: 267 RCSSELQR 290
+ S +Q+
Sbjct: 87 QLQSFMQQ 94
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 596 SRRMGHPDHQGNAGPPSETR 537
+RR+ D +GN G P E R
Sbjct: 3 TRRVKRSDGRGNGGTPEEKR 22
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 140 QVGRAGRLGHRVRA 99
++GR GR+G+R RA
Sbjct: 538 RIGRTGRVGNRGRA 551
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +2
Query: 152 TYGTGQGGSTVALASVPALLSPGAHETVVQTEP 250
T G +A ++ + SPG + +QT+P
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGNQQQTIQTQP 1299
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 8.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -1
Query: 176 SPPGLSHR*QPLQVGRAGRLGHRVRAE---GRARGLRQRGPHE 57
S PG P + + R+ RV A GR GLR RGP +
Sbjct: 394 STPGTGREHDPAKFPPSFRIS-RVAAYNTYGRNAGLRYRGPKQ 435
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 410 PRVREADHVDVLG 448
P V E+D VDV+G
Sbjct: 200 PSVSESDEVDVIG 212
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.4 bits (43), Expect = 8.8
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = -2
Query: 586 WDTQTIKEMLDHQVRLVEEII 524
WD T+KE+ + R + +++
Sbjct: 59 WDQMTVKELANSAKRDINDVL 79
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,436
Number of Sequences: 438
Number of extensions: 5397
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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