Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o17f
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.28 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   3.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 532 VQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLLHK**GT-HLQDSPFLSVNTLLL 356
           V++ S L    S+P LT ++P PV++   TST S           HL+DSP      L +
Sbjct: 137 VEKSSKLK-NKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHV 195

Query: 355 SVGLT 341
           S G T
Sbjct: 196 STGST 200


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 263 PCLASEHLRNAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 388
           P L ++ + N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 155 PPLTTQSMNNH-HMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 263 PCLASEHLRNAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 388
           P L ++ + N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 157 PPLTTQSMNNH-HMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 197


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 546 EPVPKPQPDPSK 581
           EPVP P+P P++
Sbjct: 394 EPVPTPEPQPTQ 405


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 498 EDCQESVEICCTNP 539
           +DC E V+ C TNP
Sbjct: 94  KDCGEYVDWCSTNP 107


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 178 SEKENIQNFTSLYYENYALISTLSLFFV 95
           +EK+NI  F ++   NY   S    F +
Sbjct: 294 NEKKNISEFINVVLNNYPDFSAAGFFSI 321


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 275 SEHLRNAPHAGEARHGEPGRHH 340
           S HL +A H   A H  P  +H
Sbjct: 42  SPHLNHAMHPYHANHVNPTANH 63


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 387  ESCKCVPYYLCNK 425
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 364 ACLRIRTGNLANASPTIC 417
           +C+ +  G+  N++P+IC
Sbjct: 21  SCIAVGVGSGRNSAPSIC 38


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 520 STLSWQSSSPNLTSSTPHP 464
           S LS   ++PN +S++P+P
Sbjct: 56  SLLSPSGNTPNKSSTSPYP 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,540
Number of Sequences: 336
Number of extensions: 3192
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)