Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o17f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    30   0.30 
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   3.7  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   3.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.9  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   8.5  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 580 FEGSGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 425
           F  SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 148 SLYYENYALISTLSLFFV*LRKIRIIF-FLGIFIEMFRSASNLYGDPLT 5
           ++Y   Y   + L L  +      I+F F+G +I  F  AS+ YG P T
Sbjct: 117 AMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTYGTPST 165


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = -1

Query: 397 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 233
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 232 VTSTASKSERIALLLLKHSEKENIQNFTSLYYENYALISTLSLF 101
            +ST SKS    + L  H    ++QN +     +   +   SLF
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLF 310


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 534 NPITEPVPKPQPDPSKLKGCG 596
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 550 GSVMGLVQQISTLSWQSSSPNLTSSTPHP 464
           GS++  +  +  +  +  SP LTSS P P
Sbjct: 87  GSILSWISPLKKMFSRKKSPTLTSSLPVP 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,154
Number of Sequences: 5004
Number of extensions: 48033
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)