Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o17f
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988... 32 0.40
02_04_0054 + 19279579-19280772 32 0.40
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 31 0.93
03_04_0175 - 18092055-18092583,18092819-18093378 29 2.1
01_02_0007 + 10132380-10133201 25 2.8
12_02_0279 - 16704284-16704925 29 2.8
12_02_0043 + 12762257-12762678,12762751-12762778 29 2.8
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 28 6.5
02_04_0021 + 18975992-18976408 24 6.6
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 27 8.7
>11_04_0017 +
12297539-12297697,12298191-12298229,12298457-12298825,
12298921-12299058
Length = 234
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 329 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 207
+VP A ++ GGR D + GR+ G G C RQ K+
Sbjct: 2 EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42
>02_04_0054 + 19279579-19280772
Length = 397
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 464 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 291
RH G+ + + T ++ +A+ +L+ KHA L + ++ V RA L RRR R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375
Query: 290 SED 282
D
Sbjct: 376 ESD 378
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 480 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 578
D+RF ++D E++E P+++P +P+P PS
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCPS 198
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 480 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 578
D+RF ++D E++E+ P ++P +P+P PS
Sbjct: 226 DLRFIQKDSGETLELHSKEPPSQPPIEPEPCPS 258
>01_02_0007 + 10132380-10133201
Length = 273
Score = 25.4 bits (53), Expect(2) = 2.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 534 NPITEPVPKPQPDP 575
NP +P+P+PQP P
Sbjct: 67 NPQPQPLPQPQPQP 80
Score = 22.2 bits (45), Expect(2) = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 549 PVPKPQPDPSKLKG 590
P P+PQP P L G
Sbjct: 88 PQPQPQPQPLPLPG 101
>12_02_0279 - 16704284-16704925
Length = 213
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 495 EEDCQESVEICCTNPITEPVPKPQPDPSKLKG 590
+ED E++E+ P ++P KP+P PS +G
Sbjct: 72 KEDSGETLELLSREPASQPPIKPKPCPSGSQG 103
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 480 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 578
D+ F +ED E++E+ P ++P +P+P PS
Sbjct: 17 DLHFIQEDSGETLELHSKEPPSQPPIEPEPCPS 49
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 583 NFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSS---TPHPVTLALLTSTPSLFL 422
N + S + L+ Q ++ W S+ PN+TSS + T+A+L +T +L L
Sbjct: 366 NLDESQLAISQDGTLVLLNQSRSVVWSSNVPNVTSSNVDSSEAKTVAVLLNTGNLAL 422
>02_04_0021 + 18975992-18976408
Length = 138
Score = 24.2 bits (50), Expect(2) = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 504 CQESVEICCTN-PITEPVPKPQPDP 575
C ++ +C +T P PKP+P P
Sbjct: 82 CNQNSIVCMVRCALTPPPPKPKPTP 106
Score = 22.2 bits (45), Expect(2) = 6.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 549 PVPKPQPDPSKLKGCG 596
P P P P P K G G
Sbjct: 116 PAPSPSPPPPKAAGHG 131
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = -3
Query: 155 FYVTVLRKLCTN*HIITF------FCLIT*NKDNFFFGYFY*NV 42
F V V+ ++C ++ F +CL NK NF F YFY NV
Sbjct: 160 FPVGVVSEICLAYTVLPFMKASEKYCLRMPNKWNFSFNYFYANV 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,247
Number of Sequences: 37544
Number of extensions: 354379
Number of successful extensions: 1550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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