Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o17f
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   5.9  

>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 187 LKHSEKENIQNFTSLYYENYALISTLSLFFV*LRKIRIIFFLGIF 53
           L HS+ +N+ +    YY  +  I  L   F+ +  + +  FLG F
Sbjct: 48  LTHSKIQNVWDIFKFYYRRFRRILPLYYLFIPVTLVFVHLFLGEF 92


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 519 EICCTNPITEPVPKPQPDP 575
           ++  T P+ EPVP+P P+P
Sbjct: 107 KVAVTLPVPEPVPEPVPEP 125


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 571  SGCGFG-TGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTST 437
            SG GF  TG    +  QI  L   SS+P++    P P T A  TST
Sbjct: 1173 SGTGFSFTGDTQQVADQIG-LKMASSNPSVYCPPPVPSTAAPSTST 1217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,392
Number of Sequences: 27780
Number of extensions: 289659
Number of successful extensions: 1326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)