Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o16r
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    30   0.41 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   5.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   6.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   6.7  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    26   6.7  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   6.7  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 262 RNTKARQVCIATSPLNISEASISKQSEPAKKK 167
           +N+K+R V + +SP N+   ++S   +  KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
 Frame = +3

Query: 162 NSFFFAGSDCLLILASD-----ILR-----GDVAIHTCLAFVFLCWSYLDSFVITTPIFK 311
           NSF FAGS  +  LA +     I +     G   I   +  +F C ++L++      +F 
Sbjct: 350 NSFLFAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLNASASAAVVFN 409

Query: 312 WLDILTT 332
           W   L+T
Sbjct: 410 WFCNLST 416


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 501 HSNSFDGAHYLVLHIILHVVFQLCEL 578
           HSN+ + A Y+V+H +L V+F +  L
Sbjct: 700 HSNNINDA-YVVIHTLLKVIFSVVPL 724


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 347 IPLPSCSQDVQPLENRCSNDKAIQVAPAQ 261
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = -3

Query: 352 VLYLCHLVVKMSSHLKIGVVMTKLSK*LQHRNTKARQVCIATSPLNISEASISKQSEPAK 173
           +LY+CH ++     L  G+ +  L   L   N +      AT   +I +        P K
Sbjct: 170 ILYICHWLIYKILILAFGIKVKPLGDTLPTHNGETGSHSKATVGSDIEQIEFQNMPTPVK 229

Query: 172 K 170
           K
Sbjct: 230 K 230


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = -3

Query: 352 VLYLCHLVVKMSSHLKIGVVMTKLSK*LQHRNTKARQVCIATSPLNISEASISKQSEPAK 173
           +LY+CH ++     L  G+ +  L   L   N +      AT   +I +        P K
Sbjct: 170 ILYICHWLIYKILILAFGIKVKPLGDTLPTHNGETGSHSKATVGSDIEQIEFQNMPTPVK 229

Query: 172 K 170
           K
Sbjct: 230 K 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,528
Number of Sequences: 5004
Number of extensions: 55458
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)