Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o16r
         (756 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3302|AAM71021.2|  395|Drosophila melanogaster CG30396-P...    30   3.9  
AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA...    29   9.1  

>AE013599-3302|AAM71021.2|  395|Drosophila melanogaster CG30396-PA
           protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 240 TCLAFVFLCWSYLDSFVITTPIFKW---LDILTTRWQRYNTTHLIFSRLFNFLDNSESLP 410
           T L F F  + Y DS++ + P+ KW   L  +T     ++   L++ R    L+  E+L 
Sbjct: 47  TVLPFTFPHYMYDDSYMSSNPVLKWTFNLTNITRIMAMFSGVLLMWFRRKRILNLGENLI 106

Query: 411 FH--KCR 425
            H  KC+
Sbjct: 107 LHCLKCK 113


>AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA
            protein.
          Length = 2346

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 561  KLHGELYAIQDNELHQMNSNETKLFT 484
            +LHGEL A Q+ E+ ++ S+E +L T
Sbjct: 980  ELHGELVAKQEEEIKKLRSSEAELKT 1005


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,896,941
Number of Sequences: 53049
Number of extensions: 557376
Number of successful extensions: 1342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)