Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o15r
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.90 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   1.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.4  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -2

Query: 664 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 491
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 490 LKGCISSVLQ 461
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = -2

Query: 592 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 413
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 412 AQNSTNQLI 386
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 201 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 365
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 226 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 339
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 439 NEYANHINDAQNSTNQLIDFVCYKDGD 359
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 402 LFWASLMWFAYSLPTQGRTPCSTELIQP 485
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,126
Number of Sequences: 5004
Number of extensions: 57642
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)