Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o13r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    38   0.002
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    35   0.014
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.17 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.69 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   3.7  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   4.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.5  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -3

Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
           AS   + +MPTFVF +NGK++D  +GAN
Sbjct: 67  ASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
           A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 671 SEYNINSMPTFVFVKNGKKLDEFSG 597
           SEY+I   PT    KNGK++ ++SG
Sbjct: 88  SEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
           A  +++N++P FV +   K L   SGAN
Sbjct: 66  AESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 199  IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 288
            +G I HL K D+N  K   ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 96  CFYLHNIKKKKHCDTCYLQKFLKARW 173
           CF +H +   KH +   ++K+LK  W
Sbjct: 74  CFKIHYVSSPKHPNYKNIEKYLKPGW 99


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 163 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 267
           K DG+      S GE++H  + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 419 KLISSNSLQTLKTFFIHLLKTY 484
           KL+SSN+LQ +  F+  ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 561 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG 737
           F  + +E+VD ++ + + F+  L  +      ++   GD +  INV L + D   +FGG
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGG 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,283
Number of Sequences: 5004
Number of extensions: 55845
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)