Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o13r
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 37 0.013
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 37 0.013
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 37 0.013
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 33 0.21
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 33 0.21
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 33 0.21
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 33 0.21
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 31 0.85
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 31 0.85
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 31 0.85
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 31 1.1
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z93388-11|CAB07660.2| 319|Caenorhabditis elegans Hypothetical p... 29 4.5
Z77665-1|CAB01220.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z83218-7|CAB05685.2| 283|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 28 7.9
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 28 7.9
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -3
Query: 668 EYNINSMPTFVFVKNGKKLDEFSGAN 591
EY INSMPTF+ + +G K D+FSGAN
Sbjct: 69 EYEINSMPTFLLIVDGIKKDQFSGAN 94
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 665 YNINSMPTFVFVKNGKKLDEFSGAN 591
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 665 YNINSMPTFVFVKNGKKLDEFSGAN 591
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -3
Query: 665 YNINSMPTFVFVKNGKKLDEFSGAN 591
YNI++MPTF+F+KN +++D GAN
Sbjct: 7 YNISAMPTFIFLKNRQQVDMVRGAN 31
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 671 SEYNINSMPTFVFVKNGKKLDEFSGANVD 585
S+Y++ MPTF+F KNG ++ G D
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 671 SEYNINSMPTFVFVKNGKKLDEFSGANVD 585
S+Y++ MPTF+F KNG ++ G D
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 671 SEYNINSMPTFVFVKNGKKLDEFSGANVD 585
S+Y++ MPTF+F KNG ++ G D
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 671 SEYNINSMPTFVFVKNGKKLDEFSGANVD 585
S+Y++ MPTF+F KNG ++ G D
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
+SE +NSMPTF+ ++G ++++ GA+
Sbjct: 67 SSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSGAN 591
A+ Y +N+MPTF+ NG+K GA+
Sbjct: 67 AATYGVNAMPTFIAFVNGQKKATIQGAD 94
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 674 ASEYNINSMPTFVFVKNGKKLDEFSG 597
A +Y I+++PT KNG+K+ FSG
Sbjct: 77 AMDYGISAVPTVFAFKNGEKISGFSG 102
>Z93388-11|CAB07660.2| 319|Caenorhabditis elegans Hypothetical
protein T10C6.3 protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 341 LVNNLQPKLYFYFGFFFTKWLLRNFNV 261
L++ P + F F F +WL RNFNV
Sbjct: 277 LLHVFDPVVVFAFNKEFRRWLFRNFNV 303
>Z77665-1|CAB01220.1| 339|Caenorhabditis elegans Hypothetical
protein K02E11.2 protein.
Length = 339
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 136 ILVTYKSF*KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKKPK 306
IL+TY S+ + I+I I+H+ P+ K IHT S + +++ PK
Sbjct: 255 ILITYASYVAFNFLALVYGITIPIIVHVVLPEWQKESRRLIHTCFCRSKNAIQQAPK 311
>Z83218-7|CAB05685.2| 283|Caenorhabditis elegans Hypothetical
protein C31A11.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 189 CVR*VSIVLLKTFVSNKYHNVFFFLCYASRSMFF*RRAYALKVSVQ 52
C+ V I + TFV N+ F+L +AS S R AL +S++
Sbjct: 60 CISRVYIPITMTFVDYIIKNMSFYLFWASTSFGSLRAVVALAISLE 105
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 665 YNINSMPTFVFVKNGKKLDEFSG 597
+ I + PT VF NGK++D G
Sbjct: 69 FKITAAPTLVFFSNGKEVDRIDG 91
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 665 YNINSMPTFVFVKNGKKLDEFSG 597
+ I + PT VF NGK++D G
Sbjct: 69 FKITAAPTLVFFSNGKEVDRIDG 91
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -2
Query: 456 VFNVCNEFEDINFLCL---QP-LECKKYWFCC 373
VFNV F +INFLCL +P L K Y+ C
Sbjct: 19 VFNVLGLFGNINFLCLTYIKPALRSKSYYIQC 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,965
Number of Sequences: 27780
Number of extensions: 310797
Number of successful extensions: 802
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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