Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o12r
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.022
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.12
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.15
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.36
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 2.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 3.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 4.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 4.4
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.7
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.022
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 227 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPP-KTNST*SSITRKVXVMTVSXXVIAP-LT 54
VTP P S S PP +T T S P + ST + + + S + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 53 PSNTTGTLSPPXTKATS 3
P++T+ T +PP +TS
Sbjct: 361 PTSTSSTSTPPPPASTS 377
Score = 29.5 bits (63), Expect = 0.27
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 221 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKV-XVMTVSXXVIAPLTPS 48
P T + S P P T+ TS S PP NST + +T V T S P +
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 47 NTTGTLSPP 21
++TGT S P
Sbjct: 323 SSTGTSSSP 331
Score = 28.3 bits (60), Expect = 0.62
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -2
Query: 227 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVXVMTV-SXXVIAPLT 54
+TP P S S+P P T+ + S P T ST S T + T S + P+T
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST--SCTTSTSIPTGGSSSLSTPIT 248
Query: 53 PSNTTGTLSPPXTKATS 3
P T+ P T +TS
Sbjct: 249 P-----TVPPTSTSSTS 260
Score = 28.3 bits (60), Expect = 0.62
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -2
Query: 236 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAP 60
L++ TP T P S S W TT T S T+ST +T T +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 59 LTPSNTTGTLSPPXTKATS 3
T S++T T S +S
Sbjct: 658 STSSSSTATSSTSFASESS 676
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/71 (30%), Positives = 28/71 (39%)
Frame = -2
Query: 227 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPS 48
VTP P S S PP +T T S P ST +S T + P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLL-STSTSCTTSTSIPPTGNST-TPVTPT 412
Query: 47 NTTGTLSPPXT 15
+ S P T
Sbjct: 413 VPPTSSSTPLT 423
Score = 25.4 bits (53), Expect = 4.4
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = -2
Query: 230 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTP 51
S P T + + S+PP +T + + PP ST S+ T T S + P
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPP--TSTSSTSTPPPPASTSSTGTSSSPLP 333
Query: 50 SN----TTGTLSPPXTKATS 3
S TT T PP +T+
Sbjct: 334 STSTSCTTSTSIPPTGNSTT 353
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 230 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMT--VSXXVIAPL 57
S P T + + S+PP +T + + PP + S+ S+ + S +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 56 TPSNTTGTLSPPXTKATS 3
+ S TT T PP +T+
Sbjct: 390 STSCTTSTSIPPTGNSTT 407
Score = 25.0 bits (52), Expect = 5.8
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 230 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCP-PKTNST*SSITRKVXVMTVSXXVIA-PL 57
SV + P +P + C +T S P T T ++ T + S V + PL
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491
Query: 56 TPSNTTGTLSPPXT 15
T +N T + S P T
Sbjct: 492 TTTNCTTSTSVPYT 505
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.12
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 118 QVLFVFGGHDLEVYSVVFQHGGK 186
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.15
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 167 TTEYTSRSCPPKT--NST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPPXTKATS 3
+T TS PP T NST +++ + T + + P T NTT T +PP T S
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTT--TVPPTTSLNTTTTTAPPTTHVNS 117
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -2
Query: 185 LPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPPXT 15
+PP + T+ + PP T+ ++ + + P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -2
Query: 227 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPS 48
V P + + ++PP T+ T+ + PP T+ ++ T S + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 47 NTTGTLSPPXT 15
T T+ PP T
Sbjct: 128 VNTTTVVPPTT 138
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 29.1 bits (62), Expect = 0.36
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 68 IAPLTPSNTTGTLSPPXTKATS 3
+ PL PS+ +G LSPP KA S
Sbjct: 146 VHPLRPSHVSGPLSPPEPKAAS 167
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 98 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 247
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 246
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 297 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 205
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -1
Query: 315 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 136
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 135 EDKQYLK 115
+ ++K
Sbjct: 202 DGFDFIK 208
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 247 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 363
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 228 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 112
G ++ +S SW F P N R+Y +Q+ +L
Sbjct: 69 GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 7.7
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = -1
Query: 354 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 190
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 189 KFTPVLENNRVYFKIMSTEDKQY 121
P+L + + F + Y
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSY 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,168
Number of Sequences: 5004
Number of extensions: 39927
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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