Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o12r
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   0.47 
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   1.4  
05_03_0469 + 14439472-14440905                                         28   3.3  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    28   3.3  
08_01_0692 + 6121443-6122266,6122812-6124798                           28   4.4  
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931     27   5.8  
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960     27   7.6  
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726...    27   7.6  
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    27   7.6  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 321 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 217
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 253 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 339
           +V    GVM P + +L  LLGE+++KL G
Sbjct: 7   IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35


>05_03_0469 + 14439472-14440905
          Length = 477

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 227 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 135
           +T  T+ AR  PG+  +PP W+    T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 237 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 103
           I F D K+K  K    K    +EN+ + F +M+  D QYL  +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397


>08_01_0692 + 6121443-6122266,6122812-6124798
          Length = 936

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 250 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 363
           ++V    GVM P + +L +L+G+++ KL G  +   FL
Sbjct: 7   IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44


>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
          Length = 461

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 219 KDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGXSDDRIXXGDSTADTFKHH 40
           K KT    ++   P   +N+ Y+ +        LK  N +   ++ +       DT+ HH
Sbjct: 33  KSKTFLSPAFFLHPGSVSNKFYYDVPFPRGHLALKSFNAEVVDENGVPV--PLHDTYLHH 90

Query: 39  WYLEP 25
           W +EP
Sbjct: 91  WVVEP 95


>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
          Length = 122

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 221 PKTKPARKSPGSLPPCWKTTEYT-SRSCPP 135
           PKTK  R   G+  P W +   T SRS PP
Sbjct: 51  PKTKQPRGVKGTRRPSWSSWSSTASRSSPP 80


>11_02_0004 +
           7260084-7260967,7261284-7263264,7263359-7263420,
           7263614-7263686
          Length = 999

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 250 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 339
           ++V  L GVM P + +L  L+ +++SKL G
Sbjct: 8   MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37


>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 276 HALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE 169
           H L   D  NHN + +   K  TS K  +  +PV E
Sbjct: 31  HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRE 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,614
Number of Sequences: 37544
Number of extensions: 262182
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)