Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o12r
         (471 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            30   4.6  
X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.                  30   4.6  
AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B pr...    30   4.6  
X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.                  29   8.1  

>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 176  CWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPP 21
            C  T   +S + P  T  T   +T      T +    +  TPS+T GT  PP
Sbjct: 2845 CPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPP 2896



 Score = 29.9 bits (64), Expect = 4.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -2

Query: 230  SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAP 60
            S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +     P
Sbjct: 2887 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIP 2944

Query: 59   LTPSNTTGTLSPPXT 15
             +   TTGTL    T
Sbjct: 2945 SSTLGTTGTLPEQTT 2959


>X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 176 CWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPP 21
           C  T   +S + P  T  T   +T      T +    +  TPS+T GT  PP
Sbjct: 59  CPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPP 110



 Score = 29.9 bits (64), Expect = 4.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -2

Query: 230 SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAP 60
           S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +     P
Sbjct: 101 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTTTATKSTATSVTPIP 158

Query: 59  LTPSNTTGTLSPPXT 15
            +   TTGTL    T
Sbjct: 159 SSTLGTTGTLPEQTT 173


>AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B
           protein.
          Length = 716

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 176 CWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPP 21
           C  T   +S + P  T  T   +T      T +    +  TPS+T GT  PP
Sbjct: 319 CPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPP 370



 Score = 29.9 bits (64), Expect = 4.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -2

Query: 230 SVTPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAP 60
           S TP T P  K   SP + P    T+   + S  P+T +T   +T      T +     P
Sbjct: 361 SSTPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIP 418

Query: 59  LTPSNTTGTLSPPXT 15
            +   TTGTL    T
Sbjct: 419 SSTLGTTGTLPEQTT 433


>X74370-1|CAA52408.1|  543|Homo sapiens mucin protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -2

Query: 224 TPKTKPARK---SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLT 54
           TP T P  K   SP + P    T+   + S  P+T +T   +T      T +     P +
Sbjct: 54  TPGTAPPPKVLTSPATTPTA--TSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSS 111

Query: 53  PSNTTGTLSPPXT 15
              TTGTL    T
Sbjct: 112 TLGTTGTLPEQTT 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,293,755
Number of Sequences: 237096
Number of extensions: 1486336
Number of successful extensions: 4443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)