Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o12r
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 30 0.73
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 2.9
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 2.9
Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical ... 27 5.1
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical pr... 27 6.8
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 6.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 6.8
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 27 6.8
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 27 6.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 27 9.0
L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promot... 27 9.0
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 27 9.0
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 27 9.0
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 27 9.0
AF047663-5|AAC04446.2| 247|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 33.1 bits (72), Expect = 0.10
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 230 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLT- 54
+VT T ++P TT S + PP ++T + +T+ V IAP+T
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466
Query: 53 PSNTTGTLSPPXTKATS 3
PS T T + +T+
Sbjct: 467 PSTTEKTTFTSTSSSTT 483
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.3 bits (65), Expect = 0.73
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 221 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST 120
PKT+P P ++P CW+ + PP+ N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -1
Query: 324 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 169
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 168 NNRVYFKIMSTEDK 127
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -1
Query: 324 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 169
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 168 NNRVYFKIMSTEDK 127
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical
protein C08H9.11 protein.
Length = 459
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 435 VKRLIENGKRNTMXFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQTVKLINKRDHHALKL 262
VK ++ K+N + WT+ E +KSY F + R FTE K N+++ + + L
Sbjct: 202 VKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE-LQKRWNRKNEYIISL 260
Query: 261 I 259
I
Sbjct: 261 I 261
>AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical
protein K07H8.8 protein.
Length = 347
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 393 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 214
FA Q W D K +K+ IQ+ TE+ + N + + ++N N++ SK
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303
Query: 213 KTSKKVS 193
KT S
Sbjct: 304 KTQHSTS 310
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 270 LKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV-YFKIMSTEDKQY 121
++ I N N++ FG +SW+F L NN++ I +D++Y
Sbjct: 285 IRRIRDTNTNEVYFGLVDGADHGTISWRFDKDLNNNKIGRVDIEVRDDEEY 335
>Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical
protein F14E5.3 protein.
Length = 425
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 420 ENGKRNTMXFAYQLWTKDGKEIVKSYF 340
E NTM +LW K+GK IVK Y+
Sbjct: 346 EEPNYNTMIIM-ELWKKNGKPIVKFYY 371
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 197 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTL 30
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 197 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTL 30
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 197 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTL 30
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 164 TEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSNTTGTLSPPXTKA 9
T T ++ PP T + ++ T + AP TP TT +PP T+A
Sbjct: 367 TPPTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQA 418
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = -2
Query: 224 TPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSXXVIAPLTPSN 45
T T P + + P +TT + + P T +T ++ T + + TP+
Sbjct: 97 TTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTT 156
Query: 44 TTGTLSPPXTKATS 3
TT T P T T+
Sbjct: 157 TTTT---PTTTTTT 167
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 271 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 128
PQ + QQN +R +Q+Q Q+ +E R + +QQ Q H+RQ
Sbjct: 314 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 363
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 271 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 128
PQ + QQN +R +Q+Q Q+ +E R + +QQ Q H+RQ
Sbjct: 336 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 385
>L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promoting
complex; seealso mat protein 2 protein.
Length = 728
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -1
Query: 387 YQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALK----LIDQQNHN-KIAFGD 223
+Q+ +K+ E++ FP++FR + T + L+ +H + LIDQ N +A D
Sbjct: 223 FQMLSKNAYEMIAVDFPVKFRSLITMKYC-LLRTNNHGRVDFTNYLIDQVNTKLLVASVD 281
Query: 222 SKD 214
+KD
Sbjct: 282 TKD 284
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 271 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 128
PQ + QQN +R +Q+Q Q+ +E R + +QQ Q H+RQ
Sbjct: 314 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 363
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 271 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 128
PQ + QQN +R +Q+Q Q+ +E R + +QQ Q H+RQ
Sbjct: 336 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 385
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 134 KTNST*SSITRKVXVMT--VSXXVIAPLTPSNTTGTLSPPXTKATS 3
+T ST S T+KV V T VS I TP +TT + ATS
Sbjct: 569 ETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATS 614
>AF047663-5|AAC04446.2| 247|Caenorhabditis elegans Hypothetical
protein W09G12.8 protein.
Length = 247
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 207 SKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGXSDDRIXXGDSTADTFKHHWYLE 28
S +V P LE+ V F + QY KL+N G DD D + HH L+
Sbjct: 28 SDEVYMNCYPELESRPVEF------ENQYPKLENVSGLEDDHPKREDPRPELEDHHLELK 81
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 26.6 bits (56), Expect = 9.0
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = -2
Query: 224 TPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVS-XXVIAPLTPS 48
T T+P S + T T+ + PP +++T T T S + TP
Sbjct: 175 TTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPV 234
Query: 47 NTTGTLSPPXTKATS 3
TT T +P T S
Sbjct: 235 QTTTTTAPETTSTES 249
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -2
Query: 224 TPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST-*SSITRKVXVMTVSXXVIAPLTPS 48
T T+P S + T T+R+ PP +++T + T T + + TP
Sbjct: 336 TTSTEPPSSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTSTEPPSSSTTPV 395
Query: 47 NTTGTLSPPXT 15
TT T +P T
Sbjct: 396 QTTTTTAPETT 406
>AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical
protein Y40C7B.3 protein.
Length = 416
Score = 26.6 bits (56), Expect = 9.0
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = -1
Query: 408 RNTMXFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAF 229
++ M + +TK+ K + P+ F E K+I R H+ +N N I
Sbjct: 139 KDIMTYKINKYTKNRKGNITFCIPLTHIFGFVECYNKIIYGRKHNLSLYRSPENKNSIIS 198
Query: 228 GDSKDKTSK----KVSW---KFTPVLE 169
D + T+K K+ W K P LE
Sbjct: 199 SDPQRFTAKMVINKLQWIIPKIIPCLE 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,157
Number of Sequences: 27780
Number of extensions: 227683
Number of successful extensions: 873
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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