Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11r
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0194 - 27368563-27370956                                         29   3.2  
01_06_0193 - 27359575-27361962                                         29   4.2  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    28   9.7  

>01_06_0194 - 27368563-27370956
          Length = 797

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 200 GSRVTTAHQASRELVDMSGSTNPTSMTVSGQH 105
           GSRV+  H  +  L D +G+T   S T SG+H
Sbjct: 97  GSRVSLGHDGNLVLTDTNGTTVWESKTSSGKH 128


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 200 GSRVTTAHQASRELVDMSGSTNPTSMTVSGQHPPSSAASCAGMRLRLTPSE 48
           GS+++ +H+ +    D++G+T   S T  G+H   +  +   M ++ + SE
Sbjct: 93  GSKISLSHEGNLAFTDVNGTTVWESKTGWGKHTTVALLNSGNMVMKASDSE 143


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 155 DMSGSTNPTSMTVSGQHPPSSAASCAGMRLRLTPSELLARLI 30
           D+  + +P  + +S     S  ASC   RLR TP EL  R +
Sbjct: 239 DLQDARSPAKVQLSSSRSSSGTASCNKPRLRWTP-ELHERFV 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,282,561
Number of Sequences: 37544
Number of extensions: 382927
Number of successful extensions: 1110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)